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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttcctcattctctcttttaagtatatctgagctatgtgctcttttaattttcctttttgtttgattatccttgactgcctatatcaccagGCTTTAGGAGATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT

Basic information

species Zea mays
transcript GRMZM2G038309_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038309_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 3'ss of exon 5
gtattttttcctcattctctcttttaagtatatctgagctatgtgctcttttaattttcctttttgtttgattatccttgactgcctatatcaccagGCTTTAGGAGATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT
|| |||  |    || || |   | ||||   |   |||||  |      | |  ||| |||  |  |   || |  || |||   |  |   ||||||||||||||| ||||| || || ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
gtttttgctgactatacttttcatcaagttagttgtagctagat------tcatatttgcttgataatcatttctagtttactttatgaaattccagGCTTTAGGAGACCATGGATTTCCAGTTCCCACTGCTGTTGACTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCACT

upper sequence: GRMZM2G038309_T03 (Zea mays), 3'ss of exon 5
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 5
-------gtattttttcctcattctctcttttaagtatatctgagctatgtgctcttttaattttcctttttgtttgattatccttgactgcctatatcaccagGCTTTAGGAGATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT
       |   ||||   |     |    ||||| | | | |  ||| | || ||  ||| ||    ||   |  ||||   | |  |||   |   | | |||||||| | ||| ||||||||||||||||||| ||| ||||| || ||  | ||||||||| | ||||||||||| || || ||||| ||
gttcattgctgttttctattgcatttcaatttaattgtcttt--gctgtttgttccattagttgaaatta--gcctgatg--cttcaact--ttgcttgagcagGCTTTGGAAGAACATGGTTTCCCTGTTCCAAATGCCGTGGACTGTAATAGACATTGTGTGGTTATGTCACTTGTCCAAGGTTATCCACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctcttttaattttcctttttgtttgattatccttgactgcctatatcaccagGCTTTAGGAGATCATGGTTTCCCTGTTCCAACTGCTGTGGATTGCAACCGGCATTGTGTGATCATGTCACTTGTGCAGGGATATCCTCT
      ttttaattttcctttt  TA-rich tract