1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggtttcttttgtatctgcaacctttatgtttttttcgctgtggattttataatgttggtctaatttatactccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTGTTCATGGAAGTGCACTGGGTGCCAAAGAGGTTGAAGCAACCAGGCAGA
species | Zea mays |
transcript | GRMZM2G033208_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|6952400|gb|AW424468.1|AW424468
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|149086592|gb|EE176136.2|EE176136
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTEST: gi|71311290|gb|DR791959.1|DR791959
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|148999663|gb|EE036652.2|EE036652
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|32803318|gb|CD955554.1|CD955554
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: TAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCEST: gi|78083891|gb|DV512284.1|DV512284
genomic: TAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATC
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|78079232|gb|DV507644.1|DV507644
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|148938610|gb|EC882938.2|EC882938
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGGTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCCGTTTTGGATEST: gi|149074164|gb|EE162522.2|EE162522
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGAT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCCCCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAAEST: gi|32920684|gb|CF025496.1|CF025496
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAA
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|9952380|gb|BE638963.1|BE638963
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|76281987|gb|DV021555.1|DV021555
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTEST: gi|78079231|gb|DV507643.1|DV507643
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGGTTTTGGATCTCCCAACA-GGCCAACTCATACAGTEST: gi|71311289|gb|DR791958.1|DR791958
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCCAG GTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGTCAACTCATACAGTEST: gi|76285425|gb|DV024993.1|DV024993
genomic: CAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
EST: AGGCAGTTACTGACAAGCCCACCTTGATCAAG GTGACTACCACGATCGG-TTTGGATCTCCCAACAAGGCCAACTCATACAGT
genomic: AGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttct ... ctccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGT
tatgtttttttcgctgtggattttataatgttggtctaatttatactccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTGTTCATGGAAGTGCACTGGGTGCCAAAGAGGTTGAAGCAACCAGGCAGA
gtctaat putative branch site (score: 1458)
tttatactcctttt CT-rich tract
attttataatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtttcttttgtatctgcaacctttatgtttttttcgctgtggattttataatgttggtctaatttatactccttttagGTGACTACCACGATCGGTTTTGGATCTCCCAACAAGGCCAACTCATACAGTGTTCATGGAAGTGCACTGGGTGCCAAAGAGGTTGAAGCAACCAGGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA