1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGGTCAGGGTATCGCCAATGCCGTTGGGTTGGCACTTGCTGAGAAGCACCTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttctaataacgccaacgtgcagcgtctcgcttttattacagtcttgcttttagtctgtgtggcacagttttggtaacatgtttcgtggatcctgtacag
species | Zea mays |
transcript | GRMZM2G033208_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|6952400|gb|AW424468.1|AW424468
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CAACAAGCCTGACAGTGAGATCG-C-ACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|149086592|gb|EE176136.2|EE176136
genomic: CAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|71311290|gb|DR791959.1|DR791959
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|78083762|gb|DV512155.1|DV512155
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|148999663|gb|EE036652.2|EE036652
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|148938610|gb|EC882938.2|EC882938
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|149074164|gb|EE162522.2|EE162522
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|148950704|gb|EC896296.2|EC896296
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|8383193|gb|BE056136.1|BE056136
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|149004965|gb|EE039481.2|EE039481
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|76281986|gb|DV021554.1|DV021554
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|76285424|gb|DV024992.1|DV024992
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|8318856|gb|BE025496.1|BE025496
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|78079231|gb|DV507643.1|DV507643
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|71311289|gb|DR791958.1|DR791958
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGCEST: gi|8318855|gb|BE025495.1|BE025495
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
EST: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACAC GTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
genomic: CTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttc ... tcctgtacagGTACGTTATTTTGGGAGATGGCTGCCAAATGGAGGGTATTGCTAATGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGTCAGGGTATCGCCAATGCCGTTGGGTTGGCACTTGCTGAGAAGCACCTGGCTGCCCGCTTCAACAAGCCTGACAGTGAGATCGTCGACCACTACACgtaatacttctaataacgccaacgtgcagcgtctcgcttttattacagtcttgcttttagtctgtgtggcacagttttggtaacatgtttcgtggatcctgtacag
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