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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttagttccttgcgtgtctaatttgtacatccttctgagtccaagctaacaaattagtaaacgctgatttacatttgctcgctgctctgaacttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAGACGATGCGGCGGGTATGGGTCCATGGCAAATTCAAAAAACCACCTAGGT

Basic information

species Zea mays
transcript GRMZM2G032944_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032944_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os07g23169.1 (Oryza sativa), 3'ss of exon 6
-gttagttcctt-gcgtgtctaatttgtacatccttctgagtcc-----aagctaacaaattagtaaac-gctgatttacatttgctcgctgctctgaacttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAGACGATGCGGCGGGTATGGGTCCATGGCAAATTCAAAAAACCACCTAGGT
 || |     |  |  ||| | ||| || | |   ||    | |     | |     || |||  ||||   ||| || |||||||              || |||||||||| ||||  ||||| |||||||  || |||||  |||| || ||||||| |||||  ||||| ||||| |||||||||||  |||||||    || |
tgtaaaaatttcagtttgtgtcattggtgctttggtccagtttccttgtatgtctgtaacttatgaaaccattgacttgcatttgcctatca--------ttgtgcagTTGGAACTGGGGTATTGTTGTGTCATATCAGTGAATAGAAAAAAGGGGAAGAAGATGCAACGGGTTTGGGTGCATGGCAAATTTCAAAAACCCTAAAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211229014|gb|FL455773.1|FL455773
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|78024700|gb|DV493087.1|DV493087
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|24763644|gb|CA398816.1|CA398816
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|76914811|gb|DV165697.1|DV165697
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|149085004|gb|EE174514.2|EE174514
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|74246084|gb|DT653998.1|DT653998
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|78124011|gb|DV542395.1|DV542395
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|71759527|gb|DR957464.1|DR957464
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|8368939|gb|BE051884.1|BE051884
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGGGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
EST: gi|6022396|gb|AW067324.1|AW067324
EST:     TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAG                         TTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG
genomic: TCTCATTGGATACTGTGAGAGAACTCTTTCGTGCTGCTGGGCTAGTAGAGgtaactctta ... acttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacaaattagtaaacgctgatttacatttgctcgctgctctgaacttctgcagTTGGAGCTGGAATATTGCTGTGTCAAGTCCGTGAACCGAAAGAATGGGAAGACGATGCGGCGGGTATGGGTCCATGGCAAATTCAAAAAACCACCTAGGT
                                              cttctgc  CT-rich tract
     aaattagtaaa  TA-rich tract