1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAATTCTCTTGTTATTGCTGGAGGAACGACAGATAAGCACCCAATAACTAAAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTGgtatgtattttatcccctttgtttctgtgtgttctgtttcttgtaaagataattcagaaaaggatggcaaattggaggaaactgagcatgctcgttgcag...
species | Zea mays |
transcript | GRMZM2G030598_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTG GAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTAEST: gi|78124922|gb|DV543306.1|DV543306
genomic: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTGgtatgtattt ... ttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTA
EST: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTG GAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTAEST: gi|76013568|gb|DT940738.1|DT940738
genomic: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTGgtatgtattt ... ttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTA
EST: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTG GAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTAEST: gi|88749687|gb|DY533828.1|DY533828
genomic: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTGgtatgtattt ... ttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTA
EST: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTG GAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCCCATTGGTAEST: gi|60345547|gb|DN212520.1|DN212520
genomic: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTGgtatgtattt ... ttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTA
EST: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTG GAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTA
genomic: AAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTGgtatgtattt ... ttatctgcagGAATGGAGTGTGATTGGGCGGTTACCTTTCCGAATCAAGACCACATTGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATTCTCTTGTTATTGCTGGAGGAACGACAGATAAGCACCCAATAACTAAAAAGATGGTGTTGGTTGGTGAAGTATTTCGGTTCAATCTGGGTACGCTGgtatgtattttatcccctttgtttctgtgtgttctgtttcttgtaaagataattcagaaaaggatggcaaattggaggaaactgagcatgctcgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagga