1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgatcctgctattgcaaatactgtctgaatatttggtcaacttgtaggctgtaaagatcttgaaccaaatatatttccaactaaaattcttctgtttagATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGGCAGCAAGGAGGATAGGCATGAACCTGCGCTTGAACACTGGAGTCTCGCG
species | Zea mays |
transcript | GRMZM2G030598_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAG ATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGGEST: gi|211021183|gb|FK989209.1|FK989209
genomic: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAGgtactatctt ... ttctgtttagATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGG
EST: ACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTTGC-AGTTCCTAG ATATGCTCCAGCAAACACA-CTTTGGAGAGGCAGACTTCATGTGATGGGTGEST: gi|149077978|gb|EE166712.2|EE166712
genomic: ACACAGAAACAAAAGAATGGCGTGGCATGCCACCATT-GCCAGTTCCTAGgtactatctt ... ttctgtttagATATGCTCCAGCAA-CACAACTTTGGAGAGGCAGACTTCATGTGATGGGTG
EST: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGCTCCTAG ATATGCTCCAGCAACACAACTTTGGAGAGEST: gi|76013568|gb|DT940738.1|DT940738
genomic: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAGgtactatctt ... ttctgtttagATATGCTCCAGCAACACAACTTTGGAGAG
EST: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAG ATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGGEST: gi|148968151|gb|EE019438.2|EE019438
genomic: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAGgtactatctt ... ttctgtttagATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGG
EST: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAG ATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGGEST: gi|148930190|gb|EC872589.2|EC872589
genomic: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAGgtactatctt ... ttctgtttagATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGG
EST: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAG ATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGG
genomic: GACACAGAAACAAAAGAATGGCGTGGCATGCCACCATTGCCAGTTCCTAGgtactatctt ... ttctgtttagATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGG
taggctgtaaagatcttgaaccaaatatatttccaactaaaattcttctgtttagATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGGCAGCAAGGAGGATAGGCATGAACCTGCGCTTGAACACTGGAGTCTCGCG
aactaaa putative branch site (score: 2)
ttcttctgttt CT-rich tract
aaatatatttccaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgatcctgctattgcaaatactgtctgaatatttggtcaacttgtaggctgtaaagatcttgaaccaaatatatttccaactaaaattcttctgtttagATATGCTCCAGCAACACAACTTTGGAGAGGCAGACTTCATGTGATGGGTGGCAGCAAGGAGGATAGGCATGAACCTGCGCTTGAACACTGGAGTCTCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - -cctgcta
- - - - - - - - - - -ctgtctg
- - - - - - - - - - - - - - - - - - - - - - - - gctgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa