1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTTAGAGTGGATCATGAGATGTGCACGTATTTGACGTCCGGAAAGAAGACAAAACTAGGACTCCTGAGTAGCTCCCTTAAAGTGTGGATTTTGTTGAAGgtacaatcttctgctggtccctcgtatttgttcttagcagggttcactaacatctttaaatgcattacattcag
species | Zea mays |
transcript | GRMZM2G030433_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAAACTAGGACTCCTGAGTAGCTCCCTTAAAGTGTGGATTTTGTTGAAG ATTGCCAGAGGTTTCTCCCGTGGCGCTTTTGAACTGCTACCGTACTCGGAGEST: gi|5706287|gb|AI942063.1|AI942063
genomic: CAAAACTAGGACTCCTGAGTAGCTCCCTTAAAGTGTGGATTTTGTTGAAGgtacaatctt ... ttacattcagATTGCCAGAGGTTTCTCCCGTGGCGCTTTTGAACTGCTACCGTACTCGGAG
EST: CAAAACTAGGACTCCTGAGTAGCTCCCTTAAAGTGTGGATTTTGTTGAAG ATTGCCAGAGGTTTCTCCCGTGGCGCTTTTGAACTGCTACCGTACTCGGAGEST: gi|60355440|gb|DN222413.1|DN222413
genomic: CAAAACTAGGACTCCTGAGTAGCTCCCTTAAAGTGTGGATTTTGTTGAAGgtacaatctt ... ttacattcagATTGCCAGAGGTTTCTCCCGTGGCGCTTTTGAACTGCTACCGTACTCGGAG
EST: CAAAACTAGGACTCCTGAGTAGCTCCCTTAAAGTGTGGATTTTGTTGAAG ATTGCCAGAGGTTTCTCCCGTGGCGCTTTTGAACTGCTACCGTACTCGGAG
genomic: CAAAACTAGGACTCCTGAGTAGCTCCCTTAAAGTGTGGATTTTGTTGAAGgtacaatctt ... ttacattcagATTGCCAGAGGTTTCTCCCGTGGCGCTTTTGAACTGCTACCGTACTCGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTAGAGTGGATCATGAGATGTGCACGTATTTGACGTCCGGAAAGAAGACAAAACTAGGACTCCTGAGTAGCTCCCTTAAAGTGTGGATTTTGTTGAAGgtacaatcttctgctggtccctcgtatttgttcttagcagggttcactaacatctttaaatgcattacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG