1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccagtcctaattagttgagctaggctcgcttcaagttatagttactaataataagtgagccagaattggatgtttctgttaatcttgttcattcaaccagGCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGGTTTCTGCTTAGAGTGGATCATGAGATGTGCACGTATTTGACGTCCGGAA
species | Zea mays |
transcript | GRMZM2G030433_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGAAATATGTCGACGTCTT GCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGGEST: gi|60355440|gb|DN222413.1|DN222413
genomic: GTGAAATATGTCGACGTCTTgtaagttcta ... attcaaccagGCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGG
EST: TTTTCAAAGATTGAACGTGAAATAGGTCGACGTCTT GCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGG
genomic: TTTTCAAAGATCGAACGTGAAATATGTCGACGTCTTgtaagttcta ... attcaaccagGCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGG
taataataagtgagccagaattggatgtttctgttaatcttgttcattcaaccagGCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGGTTTCTGCTTAGAGTGGATCATGAGATGTGCACGTATTTGACGTCCGGAA
ttcattc CT-rich tract
ttaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagtcctaattagttgagctaggctcgcttcaagttatagttactaataataagtgagccagaattggatgtttctgttaatcttgttcattcaaccagGCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGGTTTCTGCTTAGAGTGGATCATGAGATGTGCACGTATTTGACGTCCGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - cgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggatg