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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACTGTAAGTTGACCATCTCTAAGgcaagtctcaggcttctagatttacaattgacctgactgtccttgttctcaattgcacaactcaatatgatttgtacgtacaccttcag

Basic information

species Zea mays
transcript GRMZM2G028004_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028004_T05 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g27850.1 (Oryza sativa), 5'ss of exon 8
GTATGAAGCTAGTCAGTATTATAGACCACATCATGATTACTTCTCTGACACTGTAAGTTGACCATCTCTAAGgcaagtctcaggcttctagatttacaattgacctgactgtccttgttctcaattgcacaactcaatatgatttgtacgtacaccttcag
||||||| | || || ||||| || ||||||||||||||||| |||||||||||||||||| |  |  | |      | |   |     |||  || | ||  | |  | |||  |   ||       ||  |    | | | | |   |  |        
GTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTgtaagttgaactccctttatatgc-tatggagagcagagagctatagtttcctttgccgtcactaggctagtcattacctccgtttttaaatagacggcgc--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37392926|gb|CF633716.1|CF633716
EST:     AGACCACATCATGATTACTTCTCTGACACTGTAAGTTGACCATCTCTAAG                         TTTAACCTTAAGCGCGGAGGGCAGCGTGTTGCTACAATGCTTATGTATTTG
genomic: AGACCACATCATGATTACTTCTCTGACACTGTAAGTTGACCATCTCTAAGgcaagtctca ... acaccttcagTTTAACCTTAAGCGCGGAGGGCAGCGTGTTGCTACAATGCTTATGTATTTG