Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAGgtatgtgttccctccctattttgctgaactccaatatgcatgcttgggtgtattttctcatttcttttgcattacactacaaattctgtcatttttgttt...

Basic information

species Zea mays
transcript GRMZM2G028004_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31364418|gb|CD448773.1|CD448773
EST:     GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG                         TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT
genomic: GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAGgtatgtgttc ... acaaatatagTGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT
EST: gi|71440509|gb|DR821559.1|DR821559
EST:     GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAG                         TGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT
genomic: GATCTTTGCTTCAGTTAGCACTTCTTCATCGACTAGATGGCTATTCAGgtatgtgttc ... acaaatatagTGCATGCAGATAGTGATCCAGAGGCTGTTCTTCTTCGCCTTGGATAT