1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgcacgaaactgatgctttaatagagtagagattaaaagatttcatgcaaagttttgatttactgattctgttcaataagcttttctatttttccaacagATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACCCCTTGTGTTGTATATAAATGGAAATGGAGGTTTACTTGAGCGCATGAAGAACACAGGAGCTG
species | Zea mays |
transcript | GRMZM2G024738_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCCACCTCATGTGTGGGAGCAGTGGTCNAAACCATATATCAAACAG ATTGTGAGTAGGATTAEST: gi|91049477|gb|EB159895.1|EB159895
genomic: AGCTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAACAGgtgactcttc ... tttccaacagATTGTGAGTAGGATTA
EST: AGCTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAACAG ATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACCCCTEST: gi|71447413|gb|DR828463.1|DR828463
genomic: AGCTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAACAGgtgactcttc ... tttccaacagATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACCCCT
EST: AGCTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAACAG ATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACCCCTTGTGTTGTATEST: gi|76280664|gb|DV020232.1|DV020232
genomic: AGCTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAACAGgtgactcttc ... tttccaacagATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACCCCTTGTGTTGTAT
EST: AGCTTCCACCTCATGTGTGGGAGCAGTGGTCAAAAC-ATATATCAAACAG ATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACC
genomic: AGCTTCCACCTCATGTGTGGGAGCAGTGGTCAAAACCATATATCAAACAGgtgactcttc ... tttccaacagATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACC
tgcaaagttttgatttactgattctgttcaataagcttttctatttttccaacagATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACCCCTTGTGTTGTATATAAATGGAAATGGAGGTTTACTTGAGCGCATGAAGAACACAGGAGCTG
tactgat putative branch site (score: 2)
cttttctatttttcc putative PPT
ttttctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcacgaaactgatgctttaatagagtagagattaaaagatttcatgcaaagttttgatttactgattctgttcaataagcttttctatttttccaacagATTGTGAGTAGGATTAAGAAAGAGTGCCCTAATGTACCCCTTGTGTTGTATATAAATGGAAATGGAGGTTTACTTGAGCGCATGAAGAACACAGGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - -ctgatgc
- - - - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg