1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTCTGGTGGTCAAATTCTTGAGGCACTTCACAGTGATCCTGCCTCTTCTTTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAGgtttgtcatgatgattacaatgttatgaagagagcggctgtatgtgcatccaagggtgtttgtctagaaccctttactttatttttcatgggctgtctcgacttgagcatgtctctgttacttagagaaccgtcttgtatttttcatcattactgacatgtgatttctgttaacag
species | Zea mays |
transcript | GRMZM2G022061_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAG TACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGGEST: gi|67024598|gb|CO453347.1|CO453347
genomic: TTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAGgtttgtcatg ... ctgttaacagTACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGG
EST: TTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAG TACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGGEST: gi|32827566|gb|CD967244.1|CD967244
genomic: TTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAGgtttgtcatg ... ctgttaacagTACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGG
EST: TTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAG TACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGGEST: gi|37388853|gb|CF631641.1|CF631641
genomic: TTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAGgtttgtcatg ... ctgttaacagTACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGG
EST: TGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCCAG TACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGEST: gi|94473364|gb|EB702322.1|EB702322
genomic: TGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTT-CCCCCAGgtttgtcatg ... ctgttaacagTACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTG
EST: TTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAG TACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGG
genomic: TTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAGgtttgtcatg ... ctgttaacagTACATCATCAGCATTAGCTAAACTAAGCAAGGTTGCTTCTGGGGGAACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCTGGTGGTCAAATTCTTGAGGCACTTCACAGTGATCCTGCCTCTTCTTTGTCTGTGGAACAGGAAAGAACTGCAAAACTTTTGAAACCTTCCCCCAGgtttgtcatgatgattacaatgttatgaagagagcggctgtatgtgcatccaagggtgtttgtctagaaccctttactttatttttcatgggctgtctcgacttgagcatgtctctgttacttagagaaccgtcttgtatttttcatcattactgacatgtgatttctgttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC