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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaaaatcaagcttaatgaagtgttaaacattatttgtttaataagttctgatcatggtgagggcacctgatgttgatgaagttttatttcctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG

Basic information

species Zea mays
transcript GRMZM2G022061_T04
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022061_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g27840.1 (Oryza sativa), 3'ss of exon 11
ctaaaatcaagcttaatgaagtgttaaacattatttgtttaataagttctgatcatggtgagggcacc-tgatgttgatgaagttttatttcctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG
  | | |||   |   |        ||| || ||||    || ||   |||||  || |     ||   | |||   |  |  |  |  | ||| |  ||||||||| |  ||||||||||||||||||||||| ||||| ||||| |||||||  || || || |  ||   |||||| ||||| ||||||||||||||
-cagattcattatattttcttaacaaaatatgattttgacaagaacacctgatgctgattgatacattgtcatgaaaaaaatatcatggtacctggtgcagAAGGCGACATTATAGCAGAAGCCGTAGTAGGAGTAGAAGTCCAAGGAGGTACCATTCACGATCCCAGTCTCATTCCCGTTCGCCTTCTCGCTCTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6918688|gb|AW400218.1|AW400218
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|93012252|gb|EB637772.1|EB637772
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|89250973|gb|DY622759.1|DY622759
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTTTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|67024598|gb|CO453347.1|CO453347
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|37385048|gb|CF629639.1|CF629639
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|113684467|gb|DW836849.1|DW836849
EST:     CCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|211251413|gb|FL479559.1|FL479559
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAAAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|40335728|gb|CK369798.1|CK369798
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|37388853|gb|CF631641.1|CF631641
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
EST: gi|94473364|gb|EB702322.1|EB702322
EST:     CGATACAAGCGTCGTAGCCGCAGTAGAAGTTTTAGCCGTTNNNNNNNAAG                         AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA
genomic: CGATACAAGCGTCGTAGCCGCAGTAGAAGTCTTAGCCGTTCCCCACCAAGgtaattaaac ... cctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctgatcatggtgagggcacctgatgttgatgaagttttatttcctagcacagAAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG
                                     ttttatttcct  CT-rich tract
                               atgaagttttattt  TA-rich tract