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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATATTACTGAATTTGGAGGTTCCGATGATACCAGTGAACCAAAAGTTTCAGGGATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCGgtcgggaaactcgacttttaatatttgcaaatatacattgggcgaacttttctctgatggagcttattacctcaatcctggtgttctgaagatgactatg...

Basic information

species Zea mays
transcript GRMZM2G022061_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022061_T05 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g27840.1 (Oryza sativa), 5'ss of exon 8
AATATATTACTGAATTTGGAGGTTCCGATGATACCAGTGAACCAAAAGTTTCAGGGATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCGgtcgggaaactcgacttttaatatttgcaaatatacattgggcgaacttttctctgatggagcttattacctcaatcctggtgttctgaa-gatgactatg
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AATACATCACTGAATTTGGAGGTTCAGATGACACCAGTGACCTGAAAGTTGCAGGGATATCTCCACCTTCATCTCCAATACGAGTTGGCATACCTAACCGgtcggggaactcgacctttaatatttgcaaagatacattgggccatcttt-ctctgctgcagcatattgtcatggtcctggtattctaaaagctgaacatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93012252|gb|EB637772.1|EB637772
EST:     TCAGGGATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCG                         GTTGTCTGGTGGTCAAATTCTTGAGGCACTTCACAGTGATCCTGCCTCTTC
genomic: TCAGGGATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCGgtcgggaaac ... tattttgcagGTTGTCTGGTGGTCAAATTCTTGAGGCACTTCACAGTGATCCTGCCTCTTC
EST: gi|67024598|gb|CO453347.1|CO453347
EST:     TCAGGGATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCG                         GTTGTCTGGTGGTCAAATTCTTGAGGCACTTCACAGTGATCCTGCCTCTTC
genomic: TCAGGGATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCGgtcgggaaac ... tattttgcagGTTGTCTGGTGGTCAAATTCTTGAGGCACTTCACAGTGATCCTGCCTCTTC
EST: gi|32827566|gb|CD967244.1|CD967244
EST:     GATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCG                         GTTGTCTGGTGGTCAAATTCTTGAGGCACTTCACAGTGATCCTGCCTCTTC
genomic: GATCTCTCCGCCTTCGTCTCCAATACGAATTGACATACCTAACCGgtcgggaaac ... tattttgcagGTTGTCTGGTGGTCAAATTCTTGAGGCACTTCACAGTGATCCTGCCTCTTC