1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgtgctaattgttacattctatctgcatattagatcttggttgatcctagtagctcctatgcatgtaagcatactaagcttttgttttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACAAAGGCAGGAAAAACTTGCTGAAGTTGGTCGATACAAGCGTCGTAGCCG
species | Zea mays |
transcript | GRMZM2G022061_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACEST: gi|93012252|gb|EB637772.1|EB637772
genomic: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
EST: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACEST: gi|89250973|gb|DY622759.1|DY622759
genomic: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
EST: AAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACEST: gi|67024598|gb|CO453347.1|CO453347
genomic: AAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
EST: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACEST: gi|37385048|gb|CF629639.1|CF629639
genomic: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
EST: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACEST: gi|211251413|gb|FL479559.1|FL479559
genomic: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
EST: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGAAACGACEST: gi|40335728|gb|CK369798.1|CK369798
genomic: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
EST: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACEST: gi|37388853|gb|CF631641.1|CF631641
genomic: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
EST: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACEST: gi|94473364|gb|EB702322.1|EB702322
genomic: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
EST: ACCCCAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAA TTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
genomic: ACCACAAGAAAGACTTAAGAGGATAATGAGCAAACAGCTTAACAAGCAAAgtatgtgcta ... tttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGAC
ttgatcctagtagctcctatgcatgtaagcatactaagcttttgttttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACAAAGGCAGGAAAAACTTGCTGAAGTTGGTCGATACAAGCGTCGTAGCCG
ggttgat putative branch site (score: 5)
cttttgttttttgtc putative PPT
ttttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgctaattgttacattctatctgcatattagatcttggttgatcctagtagctcctatgcatgtaagcatactaagcttttgttttttgtcagTTAAAAAGGACACGGCTGCTGAGATTGCCAAGAAACGAGAACAGGAACGACAAAGGCAGGAAAAACTTGCTGAAGTTGGTCGATACAAGCGTCGTAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG