1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgcattccgtgttcactgtaatttgttttcacaaagtatttgctttccttaatctccatatatatttcatgttgacagATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGGCCGTGGGATACATGCTGAAAGCAATTATTGGAGCAAGCAAAAGGCTCCT
species | Zea mays |
transcript | GRMZM2G022061_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAG ATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGGEST: gi|26558363|gb|CA830598.1|CA830598
genomic: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAGgtgcattccg ... atgttgacagATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGG
EST: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAG ATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGGEST: gi|26559463|gb|CA831698.1|CA831698
genomic: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAGgtgcattccg ... atgttgacagATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGG
EST: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAG ATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGGEST: gi|22546305|gb|BU098616.1|BU098616
genomic: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAGgtgcattccg ... atgttgacagATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGG
EST: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAG ATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGGEST: gi|87156598|gb|DY401387.1|DY401387
genomic: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAGgtgcattccg ... atgttgacagATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGG
EST: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAG ATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGG
genomic: GGAACAAAGGAGAAGCCCATCATATGAAGCATATTCAAGGGGCAGAAGgtgcattccg ... atgttgacagATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGG
tgttttcacaaagtatttgctttccttaatctccatatatatttcatgttgacagATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGGCCGTGGGATACATGCTGAAAGCAATTATTGGAGCAAGCAAAAGGCTCCT
ccttaat putative branch site (score: 4)
atatatatttcatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcattccgtgttcactgtaatttgttttcacaaagtatttgctttccttaatctccatatatatttcatgttgacagATCAAGATCGAGATCAAGATCTCGTTCACCATCCCATTCTAGGCGTCATGGCCGTGGGATACATGCTGAAAGCAATTATTGGAGCAAGCAAAAGGCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA