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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatcagcgttagtttaactagagctccgattggaaatccacactactcttttagttagcagctgaaagaatgatgatactgcag

Basic information

species Zea mays
transcript GRMZM2G022061_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022061_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g27840.1 (Oryza sativa), 5'ss of exon 12
AAGGCGGCGATATAGCAGAAGCCGTAGTAGGAGCAGAAGCCCAAGAAGGTACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgta----ggtaatcagcgttagtttaactagagctccgattggaa--atccacactactcttt--tagttagcagctgaaagaatga---tgatactgcag
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AAGGCGACATTATAGCAGAAGCCGTAGTAGGAGTAGAAGTCCAAGGAGGTACCATTCACGATCCCAGTCTCATTCCCGTTCGCCTTCTCGCTCTCCAAGgtaatttagcaagcgtagttatttcgaatcagatgccgaacatccctatccctgctacttgttactagatagcatctgaaatagtaaatatggccctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6918688|gb|AW400218.1|AW400218
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|37388853|gb|CF631641.1|CF631641
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|161584781|gb|EY954043.1|EY954043
EST:     CGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: CGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|89250973|gb|DY622759.1|DY622759
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|37385048|gb|CF629639.1|CF629639
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACATAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|24767845|gb|CA402981.1|CA402981
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|211251413|gb|FL479559.1|FL479559
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|60400201|gb|DN233008.1|DN233008
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|28987293|gb|CB351559.1|CB351559
EST:     AGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACCCTGAAAATATCCAGGCAGCCCCTAACAAAG
genomic: AGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|40335728|gb|CK369798.1|CK369798
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACATAG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
EST: gi|31360537|gb|CD444894.1|CD444894
EST:     TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTG
genomic: TACCGATCCCGCTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTG
EST: gi|113777294|gb|DW893575.1|DW893575
EST:     CTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAG                         GTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG
genomic: CTCGCTCTCCAGTTCCCGGTCGCCCTCTCGCTCTCCAAGgtaggtaatc ... gatactgcagGTACCGAAGCAGGTCAAGACACTGAAAATATCCAGGCAGCCACTAACAAAG