1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gatagtagatgcactagttccagaatccagagctactaaacatttgacattgtggaccgtgctgtgtttccttgggttcacttccttacagaatgttaagATATTTTTCTGGGTGATGTTTGCCACAACATTTGGAACTCGCAAGCTCCATGAAGCTCGTAATTCGTGGCATTCTGGATGTTGGATTCTGAAGTCTCTTG
species | Zea mays |
transcript | GRMZM2G018756_T02 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
gacattgtggaccgtgctgtgtttccttgggttcacttccttacagaatgttaagATATTTTTCTGGGTGATGTTTGCCACAACATTTGGAACTCGCAAGCTCCATGAAGCTCGTAATTCGTGGCATTCTGGATGTTGGATTCTGAAGTCTCTTG
ttccttaca putative branch site
aatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatagtagatgcactagttccagaatccagagctactaaacatttgacattgtggaccgtgctgtgtttccttgggttcacttccttacagaatgttaagATATTTTTCTGGGTGATGTTTGCCACAACATTTGGAACTCGCAAGCTCCATGAAGCTCGTAATTCGTGGCATTCTGGATGTTGGATTCTGAAGTCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - -gatgcac
- - - - - - - - - - - - - - - agctact
- - - - - - - - - - - - - - - - - - - - - - tgacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgctg