1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttcctctcacacagtcaactcgatgtgatgaactcgaaattaataaagtttcgcttgtataaaaaaaacatcatctcgcttccttcatttcataatcagGTGGAGCATAGATGTTGGATGGGCAAGTACATGGGTGAAGATCATCAACGAGTGGTTCGCGGCTAGCATATACC
species | Zea mays |
transcript | GRMZM2G018756_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TACTTCGCAATGCTGTTCATTAGCTGGGAGCTTAATCCCCCAACAAGAAA GTGGAGCATAGATGTTGGATGGGCAAGTACATGGGTGAAGATCATCAACGA
genomic: TACTTCGCAATGCTGTTCATTAGCTGGGAGCTTAATCACCCAACAAGAAAgtaagatatc ... tcataatcagGTGGAGCATAGATGTTGGATGGGCAAGTACATGGGTGAAGATCATCAACGA
aaagtttcgcttgtataaaaaaaacatcatctcgcttccttcatttcataatcagGTGGAGCATAGATGTTGGATGGGCAAGTACATGGGTGAAGATCATCAACGAGTGGTTCGCGGCTAGCATATACC
tcatctcgcttccttc CT-rich tract
ttgtataaaaaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctctcacacagtcaactcgatgtgatgaactcgaaattaataaagtttcgcttgtataaaaaaaacatcatctcgcttccttcatttcataatcagGTGGAGCATAGATGTTGGATGGGCAAGTACATGGGTGAAGATCATCAACGAGTGGTTCGCGGCTAGCATATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - -tcacaca
- - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa