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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttactgtataatcttttaatcttattctctccatttggagccatttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag

Basic information

species Zea mays
transcript GRMZM2G017835_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017835_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 9
ACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatctt-actgtataatcttttaatcttattctctccatttggagccatttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag
 ||||| || ||||| ||||| || ||||||||| | || || ||||| || |||||||||||||||||   |||| | || |||||||| || |||||||||  |  | |  || |  |||  ||    |  | | | | || |    |  ||   ||   || | |   |  | | |   ||   ||||  |              
TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGgtacatggattaaattacatttctatggagtaatttac-tgtgcaaatttcattcctttacatattttatctcaatcttattttaccttgtctgttag----------

upper sequence: GRMZM2G017835_T03 (Zea mays), 5'ss of exon 9
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 9
ACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttactgtataatcttttaatcttattctctccatttggagc-catttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag
 |||||||| ||||| |||||||| || |||||| |||| ||| | || ||||||||  | || |||||||| || || ||||||||||| ||||||||||||   | | |    ||| |||  | || |    ||   |||  ||    || |||||    || || ||| |    | | | ||||  |                  
TCATTTAGGGAGAACTGCTAGCAGAAGGGATGATCTGGAATCATTAGCATATACACTGATCTTTCTTCACCGAGGTAGATTGCCATGGCAAGGATATCAGgtac--tgcagacctatcattttgttttgtagaatcatgttgttgcatgattctttctctgctaatcctgtctc-ttactcaattttcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211242967|gb|FL282600.1|FL282600
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTA
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTA
EST: gi|76015692|gb|DT942862.1|DT942862
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTACCTCACCT
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTACCTCACCT
EST: gi|87156608|gb|DY401397.1|DY401397
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAA-GATGAATACCTCACCT
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTACCTCACCT
EST: gi|76285883|gb|DV025451.1|DV025451
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTACCTCACCT
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTACCTCACCT
EST: gi|32832272|gb|CD971950.1|CD971950
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTA
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTA
EST: gi|211242968|gb|FL282601.1|FL282601
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGYTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGA
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGG-TGATAATAAATCATTTTTGGTGTGCAAGAGAAAGA
EST: gi|32832300|gb|CD971978.1|CD971978
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTA
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTA
EST: gi|211501408|gb|FL138834.1|FL138834
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTACCTCACCT
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTACCTCACCT
EST: gi|60345255|gb|DN212228.1|DN212228
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTG
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTG
EST: gi|32832043|gb|CD971721.1|CD971721
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTA
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGTA
EST: gi|32835538|gb|CD975216.1|CD975216
EST:     ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAG                         GGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGT
genomic: ATACACTAGTATTCCTTCACCGGGGCAGGTTGCCATGGCAGGGATATCAGgtatcttact ... gtgtttacagGGTGATAATAAATCATTTTTGGTGTGCAAGAGAAAGATGAGT