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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagctagcatagctaggatatatagttattactttgcattggccgcatgatctacctcttctcttctttatctgttgttgttgttgttgttgcag

Basic information

species Zea mays
transcript GRMZM2G017419_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017419_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g68480.1 (Oryza sativa), 5'ss of exon 2
GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtag---ctagcatagctaggatatatagttattactttgcattggccgcatg--atctacctcttctcttctttatctgttgttgttg----ttgttgttgcag-----------
|||||| |||||||| |||||||| |||||||||||||||||||| |||||| ||| ||| ||||||||||| || ||||||||||| || ||||||||||| || |||     |   |   |    | | ||      ||    ||||   ||  ||  || || ||  | | ||| | |     |  || |     |  ||| |||             
GTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAGgtcagttagaactgattttctttctcttgtctacgctccacccaccattattcgattggaatgtatctgctgttttcctgaataaatcgtgctaagcctccttggtgcgtgcgattcgcag

upper sequence: GRMZM2G017419_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G47850.1 (Glycine max), 5'ss of exon 2
GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgt---gaggtagctagcatagctaggatatatagttattactttgcattggccgcatgatctacctcttctcttctttatctgt-tgttgttgttgttgttgcag------------
||| || |||||||||||||||||||| || || || ||  | ||||| ||| | ||||||||||| || || ||||| || |||||||| ||||||| |||   || |||    ||     ||   ||| ||   |   | |||| |  |||  |   |  |||  | || | ||| |      || | ||  | |  ||   |            
GTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAAGTATCTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGACAACAGGgtatggatgtaatgtgctattttaatttatttatgaacacccttgcttaagcc-taaagttaaccaatactttccttgacaaacatggtattaatttgtttaatggtttgttggcag

upper sequence: GRMZM2G017419_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv04s0023g00740.t01 (Vitis vinifera), 5'ss of exon 2
GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagctagcatagctaggatatatagttattactttgcattggccgcatgatctacctcttctcttctttatctgttgttgttgttgttgttgcag
||| || || ||||||||||||||||| |||||||| ||  |||||| |||| | || || ||||| || || ||||| ||||||||||| |||||||||||  |  | ||    || ||       ||    ||| | |   |      ||| || ||  | ||  | |  | |      |||||               
GTGTGGTCCCTGCAAAGTGATGGCTCCAAAATTCCAAGAATTGTCTGGGAAGTATCTTGACGTTGTCTTTCTAAAGCTGGACTGCAACCAAGACAACAAGgtctgtaatct--tttacctg------atcccaattccctgatac-aaatgcacgagctcacactgat-tcatctgagaactgttggcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13490550|gb|BG517314.1|BG517314
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|32920941|gb|CF025753.1|CF025753
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|148948684|gb|EC898598.2|EC898598
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|8103158|gb|AW927815.1|AW927815
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|32923864|gb|CF028676.1|CF028676
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCCC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211504580|gb|FK952218.1|FK952218
EST:     AGAACCTGGATGTYGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAARATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|24934460|gb|CA452678.1|CA452678
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCAGGACATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|32926971|gb|CF031783.1|CF031783
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACACCAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCACCGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|78083870|gb|DV512263.1|DV512263
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|7844591|gb|AW787813.1|AW787813
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211502231|gb|FK952208.1|FK952208
EST:     GAACCTGGATGTTGTGTTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGG
genomic: GAACCTGGATGTTGTGTT-CCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGG
EST: gi|32924397|gb|CF029209.1|CF029209
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211502228|gb|FK952205.1|FK952205
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCCTAAAGGTTGTGGCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|148930021|gb|EE285900.2|EE285900
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211090393|gb|FL296224.1|FL296224
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211502227|gb|FK952204.1|FK952204
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|32924518|gb|CF029330.1|CF029330
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|15590152|gb|BI674768.1|BI674768
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGCTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211502225|gb|FK952202.1|FK952202
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|16919008|gb|BM073998.1|BM073998
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|33098938|gb|CF058898.1|CF058898
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|8368058|gb|BE051003.1|BE051003
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAG
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAG
EST: gi|32848739|gb|CD988420.1|CD988420
EST:     AGAACCTGGATGTTGTGTTCCTGAATCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|13490551|gb|BG517315.1|BG517315
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|148933014|gb|EE285901.2|EE285901
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211504584|gb|FK952222.1|FK952222
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAA
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAA
EST: gi|148948683|gb|EC898597.2|EC898597
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|149100284|gb|EE186349.2|EE186349
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|76017039|gb|DT944209.1|DT944209
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|78180591|gb|DV550919.1|DV550919
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|50335487|gb|CO530613.1|CO530613
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211502239|gb|FK952216.1|FK952216
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|101402530|gb|EB822821.1|EB822821
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|8368057|gb|BE051002.1|BE051002
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATC
EST: gi|211090391|gb|FL296222.1|FL296222
EST:     GAACCTGGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: GAACCTGG-ATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|32841930|gb|CD981611.1|CD981611
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|211504582|gb|FK952220.1|FK952220
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTC
EST: gi|32924545|gb|CF029357.1|CF029357
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|76017040|gb|DT944210.1|DT944210
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
EST: gi|32923813|gb|CF028625.1|CF028625
EST:     AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG                         CCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC
genomic: AGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 28

GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTCAAGGGTGGGAAGGTCGTGAAGGAGGTGACCGGCGCCAAGATCGACGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 145

GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTCAAGGGTGGGAAGGTCGTGAAGGAGGTGACCGGCGCCAAGATCGACGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 84

GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagc ... gttgttgcagCCGCTTGCGAAGGAGCTGGGCATAAAGGTTGTGCCAACGTTCAAGATCCTCAAGGGTGGGAAGGTCGTGAAGGAGGTGACCGGCGCCAAGATCGACGAGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAGgtgaggtagctagcatagctaggatatatagttattactttgcattggccgcatgatctacctcttctcttctttatctgttgttgttgttgttgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC