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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggtgatgatctctaatgacaatagatctcacctcactagctagatgattgtgtacgtagaatctgagacagcagtgtgttcattaacaatatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG

Basic information

species Zea mays
transcript GRMZM2G017419_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017419_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g68480.1 (Oryza sativa), 3'ss of exon 1
-------------------------------------------------------------------------------------atggtgatgatctctaatgacaatagatctcacctcactagctagatgattgtgtacgtagaatctgagacagcagtgtgttcattaacaat-----------atttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG
                                                                                      |  | | || ||  | | |   |  |     |  |   |   |||  |  |   |  |   |||  |     ||||||  | | |   ||            |||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||| ||| ||| ||||||||||| || ||||||||||| || |||||||||
gtacttcacaaaagccacaaaactccactgatctcttcgcgtcaatctccattgatgaactgttgcctcgcatgaattcttcagtcttatcacgagctggatttattttgaaatgagcggcgtgaataaga-aagggaacagatctcatcccactgctcagtgtaataactgtaaaactgactggttgatttgcagGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAACTCGACTGCAATCAAGACAACAAG

upper sequence: GRMZM2G017419_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G47850.1 (Glycine max), 3'ss of exon 1
----atggtgatgatctctaatgacaatag----atctcacctcactagctagatgattgtgtacgtagaatctgagacagcagtgtgttcattaacaatatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG
    ||   | |||||| | ||| || |      ||  |  || | || | |  |||   | |   ||   |  || |      ||  || || ||   | ||| |||||| || |||||||||||||||||||| || || || ||  | ||||| ||| | ||||||||||| || || ||||| || |||||||| ||||||| |
aaggatttggttgatcttttatgtcattgttatcattgctgcttatta-ccaactgaacctttggataaccttcgata------tgaatttatgaattct-ttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAAGTATCTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGACAACAGG

upper sequence: GRMZM2G017419_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G38470.1 (Glycine max), 3'ss of exon 1
atggtgatgatctctaatgacaatag----atctcacctcactagctagatgattgtgtacgtagaatctgagacagcagtgtgttcattaacaatatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG
 |   | |||||  | |||||| |      ||  |  || | || | |  ||| | | |   ||   |  || ||     | || |  ||     | ||| |||||| || |||||||||||||||||||| || || || ||  | ||||| ||| | ||||||||||| || || ||||| || |||||||| || |||| |
-tttggttgatcctttatgacattgttatcattgctgcttatta-ccaactgaatatttggataaccttcgaaacgaatttatgatttttttt--ttttttcagGTGTGGCCCTTGCAAAGTGATGGCTCCAAAGTTTCAAGAATTATCTGAAAAGTATCTGGATGTTGTCTTTCTAAAGCTTGATTGCAACCAAGAGAACAGG

upper sequence: GRMZM2G017419_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv04s0023g00740.t01 (Vitis vinifera), 3'ss of exon 1
--atggtgatgatctctaatgacaatagatctcacctcactagctagatgattgtg-tacgtagaatctgagacagcagtgtgttcattaacaatatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG
  |        |   | | |   |||  | |||| ||    | | |  |  || || ||| |    |    ||   ||   ||||  ||||  || | | |||||| || || ||||||||||||||||| |||||||| ||  |||||| |||| | || || ||||| || || ||||| ||||||||||| |||||||||
caagaactgccaatgcgacttgtaatgcaactcatctgttgatccaattttttttggtacattatttacctgatgtcatattgttgcttaa--at-tcttcagGTGTGGTCCCTGCAAAGTGATGGCTCCAAAATTCCAAGAATTGTCTGGGAAGTATCTTGACGTTGTCTTTCTAAAGCTGGACTGCAACCAAGACAACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12046767|gb|BF728906.1|BF728906
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|13490550|gb|BG517314.1|BG517314
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|32920941|gb|CF025753.1|CF025753
EST:     TACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: TACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|148948684|gb|EC898598.2|EC898598
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211090392|gb|FL296223.1|FL296223
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211090396|gb|FL296227.1|FL296227
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GT-CGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGTA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAG-A
EST: gi|8103158|gb|AW927815.1|AW927815
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|32923864|gb|CF028676.1|CF028676
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211504580|gb|FK952218.1|FK952218
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|78083870|gb|DV512263.1|DV512263
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|7844591|gb|AW787813.1|AW787813
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211502231|gb|FK952208.1|FK952208
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211502228|gb|FK952205.1|FK952205
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|148930021|gb|EE285900.2|EE285900
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211090393|gb|FL296224.1|FL296224
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211502227|gb|FK952204.1|FK952204
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|32924518|gb|CF029330.1|CF029330
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|15590152|gb|BI674768.1|BI674768
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211502225|gb|FK952202.1|FK952202
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|16919008|gb|BM073998.1|BM073998
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|8368058|gb|BE051003.1|BE051003
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|13382198|gb|BG458873.1|BG458873
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGCGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|32848739|gb|CD988420.1|CD988420
EST:     TACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: TACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211504583|gb|FK952221.1|FK952221
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|13490551|gb|BG517315.1|BG517315
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|15499241|gb|BI595754.1|BI595754
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|148933014|gb|EE285901.2|EE285901
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211504584|gb|FK952222.1|FK952222
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|148948683|gb|EC898597.2|EC898597
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTTTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|149100284|gb|EE186349.2|EE186349
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|76017039|gb|DT944209.1|DT944209
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|78180591|gb|DV550919.1|DV550919
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|50335487|gb|CO530613.1|CO530613
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211502239|gb|FK952216.1|FK952216
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|8368057|gb|BE051002.1|BE051002
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211090391|gb|FL296222.1|FL296222
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|211504582|gb|FK952220.1|FK952220
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTKCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|32924545|gb|CF029357.1|CF029357
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|76017040|gb|DT944210.1|DT944210
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
EST: gi|32923813|gb|CF028625.1|CF028625
EST:     GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATG                         GTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA
genomic: GTCGAGGCCGCCGGCGACAAGGTCGTCGTCCTCGACATGTACACCGAATGgtgcgtacac ... atatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgattgtgtacgtagaatctgagacagcagtgtgttcattaacaatatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG
                                     cattaac  putative branch site (score: 2)
                                   ttcattaacaatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atggtgatgatctctaatgacaatagatctcacctcactagctagatgattgtgtacgtagaatctgagacagcagtgtgttcattaacaatatttgcagGTGCGGGCCTTGCAAAGTGATGGCTCCGAAATTCCAGGAGATGTCTGAGAAGAACCTGGATGTTGTGTTCCTGAAGCTCGACTGCAACCAGGACAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC