1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagcctctgtccccctttccagagattatttctgcaaagcagttgtttgagaactactgaaccgttgctcgctatccacagCTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATGTGGAAAAGCAATTTCATTGTGAAAACGGTCTCTAGATCGAAG
species | Zea mays |
transcript | GRMZM2G013981_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTG CTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATGEST: gi|30087783|gb|CB885989.1|CB885989
genomic: CTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTGgtagcctctg ... ctatccacagCTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATG
EST: CTC-NNNNNNNACGATCACTGCATTATCTGGTCCTAAAACAAAAATATTG CTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATGEST: gi|30087782|gb|CB885988.1|CB885988
genomic: CTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTGgtagcctctg ... ctatccacagCTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATG
EST: CTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTG CTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATGEST: gi|29945697|gb|CB815773.1|CB815773
genomic: CTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTGgtagcctctg ... ctatccacagCTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATG
EST: CTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTG CTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATG
genomic: CTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTGgtagcctctg ... ctatccacagCTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcctctgtccccctttccagagattatttctgcaaagcagttgtttgagaactactgaaccgttgctcgctatccacagCTAGGGTACGAGATCCGTTCGACAACTGTCCATGAGAAGATGATGGAAATGTGGAAAAGCAATTTCATTGTGAAAACGGTCTCTAGATCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA