1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agcagatgtttagtagcatagctgtagtcgagtgtaacaggatcgatggtttagtgataacagagtgacttaatttctccttcatctgtacatgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTG
species | Zea mays |
transcript | GRMZM2G013981_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTT GTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTAEST: gi|30087783|gb|CB885989.1|CB885989
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttg ... catgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
EST: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTT GTTTATTCGGAGCATCTGTTGCAACCTC-NNNNNNNACGATCACTGCATTAEST: gi|30087782|gb|CB885988.1|CB885988
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttg ... catgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
EST: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTT GTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTGTAGGAACTGACGTTgtaagttttg ... catgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTA
atggtttagtgataacagagtgacttaatttctccttcatctgtacatgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTG
acttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcagatgtttagtagcatagctgtagtcgagtgtaacaggatcgatggtttagtgataacagagtgacttaatttctccttcatctgtacatgttcaagGTTTATTCGGAGCATCTGTTGCAACCTCTAATGGAGACGATTACTGCATTATCTGGTCCTAAAACAAAAATATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA