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gtatgtttaattcatgttcatgacatacagaagtgtctgttcatctaaaggggaactaatgatgccagtgatatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTCATTGGTTTGGAAGTTAATCACATTGATGAAAGGAACATGTGCTGTGGA
species | Zea mays |
transcript | GRMZM2G013079_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|71306960|gb|DR789635.1|DR789635
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|166539787|gb|EG137001.1|EG137001
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: TTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|32792123|gb|CD944359.1|CD944359
genomic: TTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: GATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|60358502|gb|DN225475.1|DN225475
genomic: GATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|5525601|gb|AI861494.1|AI861494
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|60396395|gb|DN229264.1|DN229264
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|60395888|gb|DN228758.1|DN228758
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|60398152|gb|DN230968.1|DN230968
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|32940972|gb|CF045791.1|CF045791
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|67018304|gb|CO447053.1|CO447053
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTNCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTEST: gi|91869350|gb|EB400347.1|EB400347
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
EST: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCA GCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
genomic: CAGATATATGCCATTTCGAAAGATCTCGCTACTTATATTTCAATCAACCAgtatgtttaa ... tatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTT
acagaagtgtctgttcatctaaaggggaactaatgatgccagtgatatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTCATTGGTTTGGAAGTTAATCACATTGATGAAAGGAACATGTGCTGTGGA
aactaat putative branch site (score: 65)
tgatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttaattcatgttcatgacatacagaagtgtctgttcatctaaaggggaactaatgatgccagtgatatttatcagGCCTATCTTGCACAAATATGCAAATGAAGACGTGTCGCTTGGATCATGGTTCATTGGTTTGGAAGTTAATCACATTGATGAAAGGAACATGTGCTGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA