1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgcttgtctcttccttagacacaattttacttcctcttgaatttcagttttgtttactggtgcatgcatatgaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATATTGGCTGCATGAAGTCAGGCCCAGTTCTCGCTGACAA
species | Zea mays |
transcript | GRMZM2G013079_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGATGCTGACTTCTACGTCAAGGTTGATGATGATGTGCATGTAAACTTAG GAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATAEST: gi|60358502|gb|DN225475.1|DN225475
genomic: GGATGCTGACTTCTACGTCAAGGTTGATGATGATGTGCATGTAAACTTAGgtgcttgtct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATA
EST: GGATGCTGACTTCTACGTCAAGGTTGATGATGATGTGCATGTAAACTTAG GAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATAEST: gi|5847319|gb|AW000398.1|AW000398
genomic: GGATGCTGACTTCTACGTCAAGGTTGATGATGATGTGCATGTAAACTTAGgtgcttgtct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATA
EST: GGATGCTGACTTCTACGTCAAGGTTGATGATGATGTGCATGTAAACTTAG GAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATAEST: gi|60396395|gb|DN229264.1|DN229264
genomic: GGATGCTGACTTCTACGTCAAGGTTGATGATGATGTGCATGTAAACTTAGgtgcttgtct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATA
EST: TGATGTGCATGTAAACTTAG GAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATAEST: gi|60398152|gb|DN230968.1|DN230968
genomic: TGATGTGCATGTAAACTTAGgtgcttgtct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATA
EST: TGTAAACTTAG GAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATAEST: gi|91869350|gb|EB400347.1|EB400347
genomic: TGTAAACTTAGgtgcttgtct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATA
EST: ATGTAAACTTAG GAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATA
genomic: ATGTAAACTTAGgtgcttgtct ... gaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATA
ttacttcctcttgaatttcagttttgtttactggtgcatgcatatgaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATATTGGCTGCATGAAGTCAGGCCCAGTTCTCGCTGACAA
ttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttgtctcttccttagacacaattttacttcctcttgaatttcagttttgtttactggtgcatgcatatgaccaaacagGAATGCTTGCCACTACCCTTGCTCGGCATAAATTGAAACCAAGAACTTATATTGGCTGCATGAAGTCAGGCCCAGTTCTCGCTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC