1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattcatctgatgtccaaaatttactatttgctcattgtgtggtttgactgatagtgattgtgtgggcatctcatacttccccgtgctcttcgcagGGATCATATCTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGCAGCACAGTCATTTCAGGAGACCATTGATAGTATGATGAGGTCGATGCAA
species | Zea mays |
transcript | GRMZM2G012756_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAG GGATCATATTTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGCEST: gi|211460004|gb|FL444790.1|FL444790
genomic: ATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAGgtattcatct ... ctcttcgcagGGATCATATCTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGC
EST: ATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAG GGATCATATCTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGCEST: gi|60398468|gb|DN231284.1|DN231284
genomic: ATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAGgtattcatct ... ctcttcgcagGGATCATATCTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGC
EST: ATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAG GGATCATATCTGAGCTCAGACTGGGGCTCATGEST: gi|94475192|gb|EB704150.1|EB704150
genomic: ATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAGgtattcatct ... ctcttcgcagGGATCATATCTGAGCTCAGACTGGGGCTCATG
EST: ATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAG GGATCATATCTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGC
genomic: ATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAGgtattcatct ... ctcttcgcagGGATCATATCTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGC
ggtttgactgatagtgattgtgtgggcatctcatacttccccgtgctcttcgcagGGATCATATCTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGCAGCACAGTCATTTCAGGAGACCATTGATAGTATGATGAGGTCGATGCAA
gactgat putative branch site (score: 8)
cttccccgtgctcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcatctgatgtccaaaatttactatttgctcattgtgtggtttgactgatagtgattgtgtgggcatctcatacttccccgtgctcttcgcagGGATCATATCTGAGCTCAGACTGGGGCTCATGTCGCTCGGCCTAATGTAGCAGCACAGTCATTTCAGGAGACCATTGATAGTATGATGAGGTCGATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA