1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcattgataggtagggcataggtcacatattgtttttttctgatatcttttgcactacattctattttaaccattgaattttatgttaacctcattgcagCCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAG
species | Zea mays |
transcript | GRMZM2G012756_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAGCTAGAGATCCTCCAACATAGCAGCACAGACGCCAAGAAGGCTTAG CCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTTEST: gi|211460004|gb|FL444790.1|FL444790
genomic: TCGAGCTAGAGATCCTCCAACATAGCAGCACAGACGCCAAGAAGGCTTAGgttggtccaa ... ctcattgcagCCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTT
EST: TCGAGCTAGAGATCCTCCAACATAGCAGCACAGACGCCAAGAAGGCTTAG CCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTTEST: gi|60398468|gb|DN231284.1|DN231284
genomic: TCGAGCTAGAGATCCTCCAACATAGCAGCACAGACGCCAAGAAGGCTTAGgttggtccaa ... ctcattgcagCCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTT
EST: TCGAGCTAGAGATCCTCCAACATAGCAGCACAGACGCCAAGAAGGCTTAG CCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTTEST: gi|94475192|gb|EB704150.1|EB704150
genomic: TCGAGCTAGAGATCCTCCAACATAGCAGCACAGACGCCAAGAAGGCTTAGgttggtccaa ... ctcattgcagCCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTT
EST: TCGAGCTAGAGATCCTCCAACATAGCAGCACAGACGCCAAGAAGGCTTAG CCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTT
genomic: TCGAGCTAGAGATCCTCCAACATAGCAGCACAGACGCCAAGAAGGCTTAGgttggtccaa ... ctcattgcagCCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTT
tcttttgcactacattctattttaaccattgaattttatgttaacctcattgcagCCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAG
tgttaac putative branch site (score: 4)
cctcatt CT-rich tract
tattttaaccattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattgataggtagggcataggtcacatattgtttttttctgatatcttttgcactacattctattttaaccattgaattttatgttaacctcattgcagCCTTTGCAGGCACTTCCTATATTTCTTGATAGGATGTTTCATCATGTTCTTGCTGTAATATTGTCAGTGACATTTGTTCTTGCCTTTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA