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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatgatgtatctgctagacactgctacttatttttactgtttggctatttataggtctggactcgttcttacaatatatatgacttttattttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA

Basic information

species Zea mays
transcript GRMZM2G012631_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012631_T01 (Zea mays), 3'ss of exon 2
lower sequence: EDP01972 (Chlamydomonas reinhardtii), 3'ss of exon 1
------atatgatgtatctgc-tagacactgctact-tatttttactgtttggctatttataggtctggactcgttcttacaatat-atatgacttttattttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA
           ||||  |||  | | | | | |||   |      |    |  | ||       |   |    |  ||| || |   |   | |    |       |||  ||||||||| |||||||| ||| ||||||| ||| |||||||||||  ||||||||||  |||||| ||||| || ||||  |||||||         
tgctcttggccatgtgcctgtgttgccccagttaccgcaaagccgcctcctcaccatgggcccatgccgctcggcccttccatttccacccgtcccgcagGAGGACCAGAAGGAGTACCTGGAGGAGCGGCGCATCAAGGACCTGGTCAAGAAGCACAGCGAGTTCATCTCCTACCCCATCTCGCTGTGGACCGAGAAGA---------

upper sequence: GRMZM2G012631_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ22362 (Selaginella moellendorffii), 3'ss of exon 3
atatgatgtatctgctagacactgctacttatttttactgtttggctatttataggtc-tggactcgttcttacaatatatatgacttttattttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA
                                          | |   ||| ||  || | ||   |     |  |  ||      ||||  ||    ||| | || |||||||| ||| |    ||||||||||| ||||||||||||||||| || |||||||| || |||||  ||||||| |||||||| ||||| |
-----------------------------------------gtaggcgtttctatttcatcgatgtgaaacaagtagttactctgattttggttggcacagCTTGAATACCTTGAAGAGAGGAAGCTCAAGGATCTCATCAAGAAGCACTCCGAATTTATCAGCTATCCCATCTCCGTCTGGATCGAGAAGACTACTGACA

upper sequence: GRMZM2G012631_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ25533 (Selaginella moellendorffii), 3'ss of exon 3
atatgatgtatctgctagacactgctacttatttttactgtttggctattt-ataggtctgga-ctcgttcttacaatatatatgacttttattttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA
                                   || ||  |  |||||| || | | || | |  || |||||      | ||| ||||  ||    ||| | ||||||||||| ||| |    ||||||||||| |||||||||||||||||||| |||||||| || |||||  ||||||| |||||||| ||||| |
----------------------------------gta-tgcgtttctatttcatcgatgtgaaacaagtacttac------tttga-ttttggttggcacagCTTGAGTACCTTGAAGAGAGGAAGCTCAAGGATCTCATCAAGAAGCACTCCGAGTTTATCAGCTATCCCATCTCCGTCTGGATCGAGAAGACTACTGACA

upper sequence: GRMZM2G012631_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ17594 (Selaginella moellendorffii), 3'ss of exon 3
atatgatgtatctgctagacactgctacttatttttactgtttggctatttataggtctggactcgttcttacaatatatatgacttttattttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA
                             | |||||    ||| ||| |||         ||||  | | |   |  || |    ||     | |  ||| | || ||||| |||||| |  | ||||||||||||||||||||||||||||||||||||||||| || |||||  ||||| |||||||||| || ||||
--------------------------gtgtgtttttgtgtttttgctgtttg-------agact-atccctgtgac-taaactttttcatactgcgccagCTTGAATACCTCGAGGAGAGGAGGCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTATCCCATCTCCGTCTGGGTTGAGAAGACGACCGAGA

upper sequence: GRMZM2G012631_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ29061 (Selaginella moellendorffii), 3'ss of exon 3
atatgatgtatctgctagacactgctacttatttttactgtttggctatttataggtctggactcgttcttacaatatatatgacttttattttctgc-agTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA
                             | |||||    ||| ||| |||     | |   |  ||   || | |         ||| ||  |  || || | || || || |||||| |  | ||||||||||||||||||||||||||||||||||||||||| || |||||  ||||| |||| ||||| || ||||
--------------------------gtgtgtttttgtgtttttgctgtttgagactttatccctgtgactaaact--------ttttcatactgcgccagCTTGAATATCTCGAGGAGAGGAGGCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTATCCCATCTCCGTCTGGGTTGAAAAGACGACCGAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211020113|gb|FL293933.1|FL293933
EST:     GCAACTTGGCAGGGGTACAAAGATGACCCTCTACCCTCA-GGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCCTCA-GGATCTGATCAAGAAGCACTC
genomic: GCAACTTGGCAGGGGTACAAAGATGACCCTCTACC-TCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCC-TCAAGGATCTGATCAAGAAGCACTC
EST: gi|149005535|gb|EE040094.2|EE040094
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|211133996|gb|FL293942.1|FL293942
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         NTGGAGTACCTTGAGGAGCGCCGCCTCA-GGATCTGATCNAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|67017074|gb|CO445823.1|CO445823
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|15499628|gb|BI596141.1|BI596141
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCT-GAGGAGCGCCG
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCG
EST: gi|32907205|gb|CF012018.1|CF012018
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|32907261|gb|CF012074.1|CF012074
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|6431900|gb|AW172104.1|AW172104
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|211136839|gb|FL293994.1|FL293994
EST:     GCAACTTGGCAGGGGTACAAAGATGACCCCTCTAC-TCAGGGATGATCAG                         CTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCTAGAAGCACTC
genomic: GCAACTTGGCAGGGGTACAAAGATGACCC-TCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTC
EST: gi|211020111|gb|FL293931.1|FL293931
EST:     GCAACTTGGCAAGGGTACAAAGATGACCCCTCTCCCTCA-GGATGATCAG                         TTTGGAGGTACTTTGAGGAGCGGCCCCCTCAGGGATCTGATTAAGAAGCAC
genomic: GCAACTTGGCAGGGGTACAAAGATGACCC-TCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTT-GGAG-TACCTTGAGGAGCG-CCGCCTCAAGGATCTGATCAAGAAGCAC
EST: gi|211138719|gb|FL294017.1|FL294017
EST:     GNCA-CTTGGCAGGGGTACAAAGATGACCCTCTACCTCGAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATNCA-GAAGCACTC
genomic: G-CAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGAT-CAAGAAGCACTC
EST: gi|211136833|gb|FL293988.1|FL293988
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAGGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCCAGGATCTGGATCA-GAAGCA
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTG-ATCAAGAAGCA
EST: gi|21809803|gb|BQ668121.1|BQ668121
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCA-GAAGC-CTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|166439443|gb|EG207229.1|EG207229
EST:     CAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: CAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|149013968|gb|EE043475.2|EE043475
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCCAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|211138721|gb|FL294019.1|FL294019
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|113667526|gb|DW832102.1|DW832102
EST:     GCAACTTGGCAGGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGA
genomic: GCAACTTGGCA-GGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGA
EST: gi|211135887|gb|FL293977.1|FL293977
EST:     CA-CTTTGNCAGGGGTACAAAGATGACCCTCTACCNTCA-GGATGATCAG                         TTGGAGTACCTGGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: CAACTTGG-CAGGGGTACAAAGATGACCCTCTACC-TCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|211136842|gb|FL293997.1|FL293997
EST:     GCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCNAG                         T-GGAGTACCTTGAGGAGCGCCGCCNTCAAG-ATCTGATCAAGAAGCACT
genomic: GCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATC-AGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCC-TCAAGGATCTGATCAAGAAGCACT
EST: gi|148964255|gb|EE015445.2|EE015445
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|211134004|gb|FL293950.1|FL293950
EST:     CAACTTGGGCAGGGGTACAAAGATGACCCCTCTACCTCAAGGATGAACAG                         GTGGGAGTACCCTGAGGAAGCGCCGCCTCAAGGGATCTGATCAAGAA
genomic: CAACTTGG-CAGGGGTACAAAGATGACCC-TCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGG-AGTACCTTGAGGA-GCGCCGCCTCAAGG-ATCTGATCAAGAA
EST: gi|24774104|gb|CA409358.1|CA409358
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|211134951|gb|FL293967.1|FL293967
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|15632646|gb|BI679739.1|BI679739
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTG
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTG
EST: gi|211135880|gb|FL293970.1|FL293970
EST:     AGCA-CTTGGCAGGGGTACAAAGATGACCCTCTACCTCA-GGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCA-GGATCTGATCA-GAAGCACTC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTC
EST: gi|213192615|gb|FM186627.1|FM186627
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCC
EST: gi|22819404|gb|BU499494.1|BU499494
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTTCCTTGAGGAGCGCCGCCTCAAGGATCTGATCAA
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAA
EST: gi|113682331|gb|DW841462.1|DW841462
EST:     AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAG                         TTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATC
genomic: AGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 891

GGAGTCTCAGGCTGGTGGCTCCTTCACTGTCGCACGTGATACCTCTGGGGAGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 353

GGAGTCTCAGGCTGGTGGCTCCTTCACTGTCGCACGTGATACCTCTGGGGAGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 203

GGAGTCTCAGGCTGGTGGCTCCTTCACTGTCGCACGTGATACCTCTGGGGAGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 578

GGAGTCTCAGGCTGGTGGCTCCTTCACTGTCGCACGTGATACCTCTGGGGAGCAACTTGGCAGGGGTACAAAGATGACCCTCTACCTCAAGGATGATCAGgtatagcaga ... ttttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttataggtctggactcgttcttacaatatatatgacttttattttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA
                     ttcttac  putative branch site (score: 578)
                                       cttttattttctgc  putative PPT
                     ttcttacaatatatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atatgatgtatctgctagacactgctacttatttttactgtttggctatttataggtctggactcgttcttacaatatatatgacttttattttctgcagTTGGAGTACCTTGAGGAGCGCCGCCTCAAGGATCTGATCAAGAAGCACTCCGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCACTGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- -tgatgta
- - - - - -ctgctag
- - - - - - - - - - -ctgctac
- - - - - - - - - - - - - - - - - - actgttt