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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggtttcacgctcccccagacggcccgatcgttcttctctctttgcggttttaaagttaaaatagactactacgtagactagatctgtgcgcta...

Basic information

species Zea mays
transcript GRMZM2G012631_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012631_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S258_52V6.1 (Physcomitrella patens), 5'ss of exon 1
CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggtttcacgctcccccagacggcccgatcgttcttctctctttgcggttttaaagttaaaatagactac--tacgtagactagatctgtgcgcta-----
||| |||||||| ||||| ||| ||||     | ||||||||||||||||||  |||||||||||| |||||  | || || |||  ||| || || ||||| ||||     |  |  |   |  | | |||   || ||||||    | | | || ||  |   |      ||     | ||  ||      | |  | |      
CTTTCAGGCGGAAATCAATCAGTTGCTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTCCTGCGAGAACTTATCAGCAATTCTTCTGATgtaagtg-----ctagtgctgacgaaagtcccatgcggtcttcttg--tcgggattgtagtggccagtctatctgtgtcatgtgcacgccgattcttggttggtgca

upper sequence: GRMZM2G012631_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ25533 (Selaginella moellendorffii), 5'ss of exon 1
CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtg--ggtttcacgctcccccagacggcccgatcgttcttctc--tctttgcggttttaaagttaaaatagactactacgtagactagatctgtgcgcta---
|||||||||||||||||||||||| |||   |||||||||||||||||||||  |||||||||||||||| |  |||||||||||  |||  |||| ||||||||||   | | | || ||  | | |     |     ||||  ||  |||||||  | ||   |  |      ||   |   |  | |   |||| |   |    
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtgttagatgctcgttcggcgatattttactgctattctcatcgatctttgccttctttctgcgatttctcaccgatctttgcattctttctgcgatttccag

upper sequence: GRMZM2G012631_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ29061 (Selaginella moellendorffii), 5'ss of exon 1
CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggtttcacgctcccccagacggcccgatcgttcttctctctttgcggttttaaagttaaaatagactactacgtagactagatctgtgcgcta
 |||||||| |||||||||||||| |||   |||||||||||||| ||||||  |||||||||||| ||| |  |||||||||||  |||  |||| |||||||||     |  |||  ||     |  || | || |      ||||||    || | | |      |   |  ||  | |  | ||            
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagta----tttcgcctccttgttcttccagttcttgtcaaactctttcttcttctcatgc-----tgcgccgctgtg-actccag------------

upper sequence: GRMZM2G012631_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ22362 (Selaginella moellendorffii), 5'ss of exon 1
CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtg--ggtttcacgctcccccagacggcccgatcgttcttctc--tctttgcggttttaaagttaaaatagactactacgtagactagatctgtgcgcta---
|||||||||||||||||||||||| |||   |||||||||||||||||||||  |||||||||||||||| |  |||||||||||  |||  |||| ||||||||||   | | | || ||  | | |   | |     ||||  ||  |||||||  | ||   |  |      ||   |   |    |   |||| |   |    
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtgttagatgctcgttcggcgatatttcactgcgattctcatcgatctttgccttctttctgcgatttctcaccgatctttgcgttctttctgcgatttccag

upper sequence: GRMZM2G012631_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ17594 (Selaginella moellendorffii), 5'ss of exon 1
CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggtt-tcacgctcccccagac---ggcccgatcgttcttctctctttgcggttttaaagttaaaatagactactacgtagactagatctgtgcgcta
 |||||||| |||||||||||||| |||   |||||||||||||| ||||||  |||||||||||| ||| |  |||||||||||  |||  |||| |||||||||   |   | || ||  ||||     | |    || |||||||     ||| |   |   || |    ||                             
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtatttcgcctcgttcttccagttcttgtcaaactctttcttcttctcatgctgcgctgctgtgactccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211139656|gb|FL294027.1|FL294027
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32913355|gb|CF018167.1|CF018167
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32934081|gb|CF038893.1|CF038893
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCCGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32908790|gb|CF013603.1|CF013603
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211020113|gb|FL293933.1|FL293933
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211139658|gb|FL294029.1|FL294029
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134948|gb|FL293964.1|FL293964
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136843|gb|FL293998.1|FL293998
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211020116|gb|FL293936.1|FL293936
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211138722|gb|FL294020.1|FL294020
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32908620|gb|CF013433.1|CF013433
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134005|gb|FL293951.1|FL293951
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134943|gb|FL293959.1|FL293959
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|116814224|gb|EC856757.1|EC856757
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|22819259|gb|BU499349.1|BU499349
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136830|gb|FL293985.1|FL293985
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211135883|gb|FL293973.1|FL293973
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|149005535|gb|EE040094.2|EE040094
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136840|gb|FL293995.1|FL293995
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211137771|gb|FL294002.1|FL294002
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211020118|gb|FL293938.1|FL293938
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211133996|gb|FL293942.1|FL293942
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|67017074|gb|CO445823.1|CO445823
EST:     ATCTTCCTCAGGGAAGCTCCTCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ATCTTCCTCAGGG-AGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134949|gb|FL293965.1|FL293965
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGSAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134006|gb|FL293952.1|FL293952
EST:     ACTMCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211138727|gb|FL294025.1|FL294025
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211135892|gb|FL293982.1|FL293982
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|22542099|gb|BU092537.1|BU092537
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|28188125|gb|CB179735.1|CB179735
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGNT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136837|gb|FL293992.1|FL293992
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTYGGA
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCT-GGA
EST: gi|211020109|gb|FL293929.1|FL293929
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32944847|gb|CF049666.1|CF049666
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|23199772|gb|BU582337.1|BU582337
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32907261|gb|CF012074.1|CF012074
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211133998|gb|FL293944.1|FL293944
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211020119|gb|FL293939.1|FL293939
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136839|gb|FL293994.1|FL293994
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211020117|gb|FL293937.1|FL293937
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211020111|gb|FL293931.1|FL293931
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211138719|gb|FL294017.1|FL294017
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211139660|gb|FL294031.1|FL294031
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGNATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGA
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAG-ATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGA
EST: gi|211020110|gb|FL293930.1|FL293930
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136833|gb|FL293988.1|FL293988
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|33094168|gb|CF054162.1|CF054162
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCTGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211137777|gb|FL294008.1|FL294008
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134952|gb|FL293968.1|FL293968
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134940|gb|FL293956.1|FL293956
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|149013968|gb|EE043475.2|EE043475
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211138721|gb|FL294019.1|FL294019
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|22935636|gb|BU571911.1|BU571911
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211133999|gb|FL293945.1|FL293945
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134000|gb|FL293946.1|FL293946
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211135887|gb|FL293977.1|FL293977
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211138716|gb|FL294014.1|FL294014
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|9953262|gb|BE639845.1|BE639845
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211137779|gb|FL294010.1|FL294010
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134947|gb|FL293963.1|FL293963
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136842|gb|FL293997.1|FL293997
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211135884|gb|FL293974.1|FL293974
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|148964255|gb|EE015445.2|EE015445
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32907206|gb|CF012019.1|CF012019
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134946|gb|FL293962.1|FL293962
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211137770|gb|FL294001.1|FL294001
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211137775|gb|FL294006.1|FL294006
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134004|gb|FL293950.1|FL293950
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32907262|gb|CF012075.1|CF012075
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211139659|gb|FL294030.1|FL294030
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134942|gb|FL293958.1|FL293958
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|24774104|gb|CA409358.1|CA409358
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|15632646|gb|BI679739.1|BI679739
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|22819590|gb|BU499680.1|BU499680
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211133995|gb|FL293941.1|FL293941
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134002|gb|FL293948.1|FL293948
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211135893|gb|FL293983.1|FL293983
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136832|gb|FL293987.1|FL293987
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134953|gb|FL293969.1|FL293969
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211133994|gb|FL293940.1|FL293940
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|95107931|gb|EB740160.1|EB740160
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211135880|gb|FL293970.1|FL293970
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211020114|gb|FL293934.1|FL293934
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32910543|gb|CF015355.1|CF015355
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134939|gb|FL293955.1|FL293955
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32945006|gb|CF049825.1|CF049825
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|22543033|gb|BU093471.1|BU093471
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|32943467|gb|CF048286.1|CF048286
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211137780|gb|FL294011.1|FL294011
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211134007|gb|FL293953.1|FL293953
EST:     CTCCAACAAGGAAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: CTCCAACAAGGA-GATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211136838|gb|FL293993.1|FL293993
EST:     ACTCCAACAAGTAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|213192615|gb|FM186627.1|FM186627
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|5555282|gb|AI881233.1|AI881233
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|21809804|gb|BQ668122.1|BQ668122
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211137774|gb|FL294005.1|FL294005
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|148972741|gb|EE023711.2|EE023711
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|116829415|gb|EC867394.1|EC867394
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211137781|gb|FL294012.1|FL294012
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211138728|gb|FL294026.1|FL294026
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
EST: gi|211138724|gb|FL294022.1|FL294022
EST:     ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGAT                         GCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1767

CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGATGCACAGCCAGAGCTGTTCATCCACATTGTCCCCGACAAGGCCAACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 411

CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGATGCACAGCCAGAGCTGTTCATCCACATTGTCCCCGACAAGGCCAACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 266

CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGATGCACAGCCAGAGCTGTTCATCCACATTGTCCCCGACAAGGCCAACAACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1102

CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggt ... ttccaaacagGCCTTGGACAAGATCAGGTTTGAGAGTTTGACGGACAAGACCAAGCTGGATGCACAGCCAGAGCTGTTCATCCACATTGTCCCCGACAAGGCCAACAACA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCCAGGCGGAGATCAACCAGCTGCTCTCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCCGATgtgagtgggtttcacgctcccccagacggcccgatcgttcttctctctttgcggttttaaagttaaaatagactactacgtagactagatctgtgcgcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataga