1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtttacatgattttctaagaattataactagcatagaggctaagtggttattttgaaacgagctacttttgggtactcaaagtctctatgtttctttcagGTGCTAGGTGGAAAAGTCCGCAGAAGGAAATTACTTTCACCCAAAGATAGGAATGTCCGTCCAATGATGGAAGTTGTCCGAGGAGCAGCCTTTGACATTT
species | Zea mays |
transcript | GRMZM2G010801_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGACTCCAGCGAAGGTGGAGGAGCCTCGGGAGACTCACAAAATGCTCCAG GTGCTAGGTGGAAAAGTCCGCAGAAGGAAATTACTTTCACCCAAAGATAGGEST: gi|89761498|gb|DY689490.1|DY689490
genomic: TGACTCCAGCGAAGGTGGAGGAGCCTCGGGAGACTCACAAAATGCTCCAGgtttgggcag ... tttctttcagGTGCTAGGTGGAAAAGTCCGCAGAAGGAAATTACTTTCACCCAAAGATAGG
EST: GACTCCAGCGAAGGTGGAGGAGCCTCGGGAGACTCCCAAAATGCTTCCAG GTGCTAGGTGGAAAAGTCCGCATAAGGAAATTACTTTTCACCCCAAAGATEST: gi|149094996|gb|EE180590.2|EE180590
genomic: GACTCCAGCGAAGGTGGAGGAGCCTCGGGAGACTCACAAAATGCT-CCAGgtttgggcag ... tttctttcagGTGCTAGGTGGAAAAGTCCGCAGAAGGAAATTACTTT-CACCC-AAAGAT
EST: TGACTCCAGCGAAGGTGGAGGAGCCTCGGGAGACTCACAAAATGCTCCAG GTGCTAGGTGGAAAAGTCCGCAGAAGGAAATTACTTTCACCCAAAGATAGG
genomic: TGACTCCAGCGAAGGTGGAGGAGCCTCGGGAGACTCACAAAATGCTCCAGgtttgggcag ... tttctttcagGTGCTAGGTGGAAAAGTCCGCAGAAGGAAATTACTTTCACCCAAAGATAGG
ggttattttgaaacgagctacttttgggtactcaaagtctctatgtttctttcagGTGCTAGGTGGAAAAGTCCGCAGAAGGAAATTACTTTCACCCAAAGATAGGAATGTCCGTCCAATGATGGAAGTTGTCCGAGGAGCAGCCTTTGACATTT
tctctatgtttctttc CT-rich tract
ttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacatgattttctaagaattataactagcatagaggctaagtggttattttgaaacgagctacttttgggtactcaaagtctctatgtttctttcagGTGCTAGGTGGAAAAGTCCGCAGAAGGAAATTACTTTCACCCAAAGATAGGAATGTCCGTCCAATGATGGAAGTTGTCCGAGGAGCAGCCTTTGACATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - -catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa