1 5' 3' | 2 5' 3' | 3 5' 3' |
gtctactccaattattctgaacttattcgtaatgattgtcgctgcgaattggtgtgattttgagtggtatgctttctcttttcattttttgcagGAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAAACTGCGGAAGCGGCAGTGACTCCAGCGAAGGTGGAGGAGCCTCGGGAGA
species | Zea mays |
transcript | GRMZM2G010801_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGGGCTCAACCCAAACGACTTCGAGGAAGATGCAGAGGAGAATCCGAGG GAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAAEST: gi|89761498|gb|DY689490.1|DY689490
genomic: ACGGGCTCAACCCAAACGACTTCGAGGAAGATGCAGAGGAGAATCCGAGGgtctactcca ... ttttttgcagGAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAA
EST: CGGGCTCAACCCCAAACGACTTCGAGGAAGATGCAGAGGAGAATCCGAGG GAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAAEST: gi|149094996|gb|EE180590.2|EE180590
genomic: CGGGCTCAACCC-AAACGACTTCGAGGAAGATGCAGAGGAGAATCCGAGGgtctactcca ... ttttttgcagGAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAA
EST: ACGGGCTCAACCCAAACGACTTCGAGGAAGATGCAGAGGAGAATCCGAGG GAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAA
genomic: ACGGGCTCAACCCAAACGACTTCGAGGAAGATGCAGAGGAGAATCCGAGGgtctactcca ... ttttttgcagGAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAA
cgctgcgaattggtgtgattttgagtggtatgctttctcttttcattttttgcagGAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAAACTGCGGAAGCGGCAGTGACTCCAGCGAAGGTGGAGGAGCCTCGGGAGA
tatgctttctcttttc CT-rich tract
tcttttcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctactccaattattctgaacttattcgtaatgattgtcgctgcgaattggtgtgattttgagtggtatgctttctcttttcattttttgcagGAAGAGAGAAAGGACAGGCGGAGACGTCGGCAGTCGGGGAGAGGGGAGCAAACTGCGGAAGCGGCAGTGACTCCAGCGAAGGTGGAGGAGCCTCGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG