1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgataccatgaaaccgattatgttttttatccttcttacctttgctgccgaagtactaaactcggagacttgactatgttgtttatgtttcctttgcagGACATGGGCTTCAGCCTCTTCGACTGAGCTGTGTGGGCAGTCATCACATCAGAGTAGTTTGTTTTGTTTTGACTTTTGAGTCGTGGAACCAGAGGAAAAT
species | Zea mays |
transcript | GRMZM2G010257_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGCGAAGAAAGAAGAGAAGTTGGAGGAGAAGGAAGAGAGCGACGAT GACATGGGCTTCAGCCTCTTCGCCTGAGCTGTGTGGGCAGTCATCACATCAEST: gi|211047645|gb|FL025866.1|FL025866
genomic: CTGAGGCGAAGAAAGAAGAGAAGGTGGAGGAGAAGGAAGAGAGCGACGATgtaagatcat ... tcctttgcagGACATGGGCTTCAGCCTCTTCGACTGAGCTGTGTGGGCAGTCATCACATCA
EST: CTGAGGCGAAGAAAGGAGAGAAGGTGGAGGAGAAGGAAGAGAGCGACGAT GACATGGGCTTCAGCCTCTTCGACTGAGCTGTGTGGGCAGTCATCACATCAEST: gi|213178809|gb|FM183730.1|FM183730
genomic: CTGAGGCGAAGAAAGAAGAGAAGGTGGAGGAGAAGGAAGAGAGCGACGATgtaagatcat ... tcctttgcagGACATGGGCTTCAGCCTCTTCGACTGAGCTGTGTGGGCAGTCATCACATCA
EST: GAGGAGAAGGAAGAGAGCGACGAT GACATGGGCTTCAGCCTCTTCGACTGAGCTGTGTGGGCAGTCATCACATCA
genomic: GAGGAGAAGGAAGAGAGCGACGATgtaagatcat ... tcctttgcagGACATGGGCTTCAGCCTCTTCGACTGAGCTGTGTGGGCAGTCATCACATCA
ctgccgaagtactaaactcggagacttgactatgttgtttatgtttcctttgcagGACATGGGCTTCAGCCTCTTCGACTGAGCTGTGTGGGCAGTCATCACATCAGAGTAGTTTGTTTTGTTTTGACTTTTGAGTCGTGGAACCAGAGGAAAAT
tttatgtttccttt CT-rich tract
tttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgataccatgaaaccgattatgttttttatccttcttacctttgctgccgaagtactaaactcggagacttgactatgttgtttatgtttcctttgcagGACATGGGCTTCAGCCTCTTCGACTGAGCTGTGTGGGCAGTCATCACATCAGAGTAGTTTGTTTTGTTTTGACTTTTGAGTCGTGGAACCAGAGGAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - ccatgaa
- - - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt