1 5' 3' | 2 5' 3' | 3 5' 3' |
...gccctgtatttactaatttcttgctgtgcttgtaccttggcacactgctcaagtagcagaagcatctgatcttatcattcctacttaatgcatgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGAGCGGTAAGGACATTACCGAGCTCATTGCTGCGGGCAGGGAGAAGTTTGC
species | Zea mays |
transcript | GRMZM2G010257_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAGGACTTGACGGCCATTCTGGAGTCAG TTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCTTGCTGTCCCAACTGAEST: gi|211214073|gb|FL134475.1|FL134475
genomic: TGAGGACTTGACGGCCATTCTGGAGTCAGgtattttcac ... catgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGA
EST: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAG TTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGAEST: gi|211216646|gb|FL134489.1|FL134489
genomic: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAGgtattttcac ... catgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGA
EST: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAG TTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGAEST: gi|211216638|gb|FL134481.1|FL134481
genomic: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAGgtattttcac ... catgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGA
EST: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAG TTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGAEST: gi|211047645|gb|FL025866.1|FL025866
genomic: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAGgtattttcac ... catgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGA
EST: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAG TTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGAEST: gi|211216636|gb|FL134479.1|FL134479
genomic: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAGgtattttcac ... catgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGA
EST: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAG TTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGAEST: gi|116828440|gb|EC871996.1|EC871996
genomic: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAGgtattttcac ... catgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGA
EST: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAG TTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGA
genomic: TGGGAACTCCAGCCCCTCTGCTGAGGACTTGACGGCCATTCTGGAGTCAGgtattttcac ... catgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGA
tgctcaagtagcagaagcatctgatcttatcattcctacttaatgcatgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGAGCGGTAAGGACATTACCGAGCTCATTGCTGCGGGCAGGGAGAAGTTTGC
acttaat putative branch site (score: 370)
ttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctgtatttactaatttcttgctgtgcttgtaccttggcacactgctcaagtagcagaagcatctgatcttatcattcctacttaatgcatgtcacagTTGGCTGTGAAGTTGACAATGAAAAGATGGAGCTCCTGCTGTCCCAACTGAGCGGTAAGGACATTACCGAGCTCATTGCTGCGGGCAGGGAGAAGTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-ccctgta
- - - - - - - - - -cttgctg
- - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - - -actgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - gtagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatctg