1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgccccggcccgccttgctgctctgggcgccgcgtttgattcacataccaacacgcgcggccgccccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGCGCGCGGCGCTGGAGCCCGGGGAGAACGTGTGGGTCGACGTCGACGTGC
species | Zea mays |
transcript | GRMZM2G010044_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185239|gb|FL072193.1|FL072193
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185232|gb|FL072186.1|FL072186
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGTGCGTCGGAGEST: gi|211190029|gb|FL072209.1|FL072209
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACEST: gi|71772889|gb|DR970812.1|DR970812
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGAC
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185236|gb|FL072190.1|FL072190
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|76012112|gb|DT939282.1|DT939282
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211187639|gb|FL072208.1|FL072208
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|31355882|gb|CD440239.1|CD440239
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185238|gb|FL072192.1|FL072192
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|31354069|gb|CD438426.1|CD438426
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211187626|gb|FL072195.1|FL072195
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211187638|gb|FL072207.1|FL072207
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211187630|gb|FL072199.1|FL072199
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: CGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCCGGCTCG GTGAAGAGCGCGATCACCATGACGGAGAAGATACTGGCGCGGGCGTCGGAEST: gi|91051662|gb|EB162080.1|EB162080
genomic: CGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACC-GGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGA
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185235|gb|FL072189.1|FL072189
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211187628|gb|FL072197.1|FL072197
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
ctctgggcgccgcgtttgattcacataccaacacgcgcggccgccccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGCGCGCGGCGCTGGAGCCCGGGGAGAACGTGTGGGTCGACGTCGACGTGC
gtttgat putative branch site (score: 5)
ccccgtctcc putative PPT
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccccggcccgccttgctgctctgggcgccgcgtttgattcacataccaacacgcgcggccgccccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGCGCGCGGCGCTGGAGCCCGGGGAGAACGTGTGGGTCGACGTCGACGTGC
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