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Data associated with selected splice site

General
EST
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtccaggtccgccctctcccggccggtctccccacttccgtccctccttctctcgcgccacgttactgaccgaccgaccccacttctcttccctttcccgccagcagAAGGAGCTGGCCGCGCCGGCGCAGCGCCGCGCGGGCTTGACCCGCCGGACCAAGCCGTGCAGCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGT

Basic information

species	Zea mays
transcript	GRMZM2G010044_T03
intron #	1
splice site	3'
intron type	U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|76909966|gb|DV163627.1|DV163627

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|211185239|gb|FL072193.1|FL072193

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211185239|gb|FL072193.1|FL072193

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211185239|gb|FL072193.1|FL072193

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211185239|gb|FL072193.1|FL072193

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211185239|gb|FL072193.1|FL072193

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211185232|gb|FL072186.1|FL072186

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|211190029|gb|FL072209.1|FL072209

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211190029|gb|FL072209.1|FL072209

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211190029|gb|FL072209.1|FL072209

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211190029|gb|FL072209.1|FL072209

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|211190029|gb|FL072209.1|FL072209

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         G
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcag-

EST: gi|71772889|gb|DR970812.1|DR970812

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAGCAG                 
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCG--C-A----CA--AGgtccaggtcc ... cc

EST: gi|211185236|gb|FL072190.1|FL072190

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|76012112|gb|DT939282.1|DT939282

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|211187639|gb|FL072208.1|FL072208

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|31355882|gb|CD440239.1|CD440239

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|211185238|gb|FL072192.1|FL072192

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         AAGGAGCTGGCCGCGCCGGCGCAGCGCCGCGCGGGCTTGACCCGCCGGACC
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcagAAGGAGCTGGCCGCGCCGGCGCAGCGCCGCGCGGGCTTGACCCGCCGGACC

EST: gi|31354069|gb|CD438426.1|CD438426

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAGCAG                 
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCG--C-A----CA--AGgtccaggtcc ... cc

EST: gi|211187626|gb|FL072195.1|FL072195

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|211187638|gb|FL072207.1|FL072207

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|211187630|gb|FL072199.1|FL072199

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         AAGGAGCTGGCCGCGCCGGCGCAGCGCCGCGCGGGCTTGACCCGCCGGACC
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcagAAGGAGCTGGCCGCGCCGGCGCAGCGCCGCGCGGGCTTGACCCGCCGGACC

EST: gi|91051662|gb|EB162080.1|EB162080

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|211185235|gb|FL072189.1|FL072189

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGGTCCAG                    
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCAC-A-----AGgtccaggtcc ... ccgcc

EST: gi|211187628|gb|FL072197.1|FL072197

EST:     CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAG                         AAGGAGCTGGCCGCGCCGGCGCAGCGCCGCGCGGGCTTGACCCGCCGGACC
genomic: CCTCCTCCGTCTCCGCCGCCGCCAAGGCCGCCGCGGCGTTCGCGCACAAGgtccaggtcc ... ccgccagcagAAGGAGCTGGCCGCGCCGGCGCAGCGCCGCGCGGGCTTGACCCGCCGGACC

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tcgcgccacgttactgaccgaccgaccccacttctcttccctttcccgccagcagAAGGAGCTGGCCGCGCCGGCGCAGCGCCGCGCGGGCTTGACCCGCCGGACCAAGCCGTGCAGCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGT

           tactgac  putative branch site (score: 1)
                     ccgaccccacttctct  putative PPT