1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccaacatttgtttgggtgtacatgtacatttagaaacttgagatcgttcccacaaattagtcggcagattactgacccttctagtgcttatggattgcagCTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAG
species | Zea mays |
transcript | GRMZM2G009320_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACG CTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTCEST: gi|211185368|gb|FL306759.1|FL306759
genomic: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACGgtaagtagtc ... tggattgcagCTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTC
EST: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAA-CAACACG CTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTEST: gi|37394767|gb|CF634660.1|CF634660
genomic: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACGgtaagtagtc ... tggattgcagCTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCT
EST: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACG CTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTCEST: gi|211534809|gb|FL337821.1|FL337821
genomic: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACGgtaagtagtc ... tggattgcagCTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTC
EST: AGGCGGAGGACGACGTGTCCCANGTGCAGCTCGCCTTCCAAAACAACACG CTGGGAGGGATCCTTCATAAAGGACGACGTCCCTTATTATTTTTGGGCCTTEST: gi|211423743|gb|FL401025.1|FL401025
genomic: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACGgtaagtagtc ... tggattgcagCTGG-AGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTT
EST: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACG CTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTCEST: gi|13126459|gb|BG317029.1|BG317029
genomic: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACGgtaagtagtc ... tggattgcagCTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTC
EST: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACG CTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTC
genomic: AGGCGGAGGACGACGTGTCCCAGGTGCAGCTCGCCTTCCAAAACAACACGgtaagtagtc ... tggattgcagCTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTC
gttcccacaaattagtcggcagattactgacccttctagtgcttatggattgcagCTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAG
tactgac putative branch site (score: 1)
acaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaacatttgtttgggtgtacatgtacatttagaaacttgagatcgttcccacaaattagtcggcagattactgacccttctagtgcttatggattgcagCTGGAGGGATCCTTCATAAAGAACGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA