1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaacgcttcagaaatgttggattgcacgcagcacgcgtgagcctgtttctatgcagtatgtactcccgattgctgacgcatcgtttgctgctgctattttgatttcctgaagTTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGGCGGCGAAGCCGGCCGCGGCCGCCAAGCCAAAGAAGGCCGCGGCGCTGCC
species | Zea mays |
transcript | GRMZM2G009320_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGGGTGGGATCTCTTCTGAATAAGTTCTCTCGAGACGTAGATCGGCATG TTAGCAAGAAGAAGGATGCCGCGEST: gi|211185368|gb|FL306759.1|FL306759
genomic: GTGGGTGGGATCTCTTCTGAATAAGTTCTCTCGAGACGTAGATCGGCATGgtaacgcttc ... tttcctgaagTTAGCAAGAAGAAGGATGCCGCG
EST: GTGGGTGGGATCTCTTCTGAATAAGTTCTCTCGAGACGTAGATCGGCATG TTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGGEST: gi|211534809|gb|FL337821.1|FL337821
genomic: GTGGGTGGGATCTCTTCTGAATAAGTTCTCTCGAGACGTAGATCGGCATGgtaacgcttc ... tttcctgaagTTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGG
EST: NTGGGTGGGATCTCTTCTGAATAAGTTCTCTCGAGACGTAGATCGGCATG TTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGGEST: gi|211423743|gb|FL401025.1|FL401025
genomic: -TGGGTGGGATCTCTTCTGAATAAGTTCTCTCGAGACGTAGATCGGCATGgtaacgcttc ... tttcctgaagTTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGG
EST: TGTGGTGGGATCTCTTCTGAATAAGTTCTCTCGAGACGTAGATCGGCATG TTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGG
genomic: TG-GGTGGGATCTCTTCTGAATAAGTTCTCTCGAGACGTAGATCGGCATGgtaacgcttc ... tttcctgaagTTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGG
atgtactcccgattgctgacgcatcgtttgctgctgctattttgatttcctgaagTTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGGCGGCGAAGCCGGCCGCGGCCGCCAAGCCAAAGAAGGCCGCGGCGCTGCC
tttcct CT-rich tract
tattttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgcttcagaaatgttggattgcacgcagcacgcgtgagcctgtttctatgcagtatgtactcccgattgctgacgcatcgtttgctgctgctattttgatttcctgaagTTAGCAAGAAGAAGGATGCCGCGGACGGGGCCAAGGAGGCCACAGCGGAGGCGGCGAAGCCGGCCGCGGCCGCCAAGCCAAAGAAGGCCGCGGCGCTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG