1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taggcgttctactattctatggtctaaagcaatttgttggattttgtaacattcacagttagctaacatgtaatcgtttttttttgtgaaattgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTCACGGGAACTGCCAAGAAGCAAACCAAGGAGAAAACTCCGAAAAGCAGC
species | Zea mays |
transcript | GRMZM2G008259_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|78544063|gb|DV621561.1|DV621561
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: CAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|101398089|gb|EB820919.1|EB820919
genomic: CAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|149070148|gb|EE158549.2|EE158549
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|76916780|gb|DV166549.1|DV166549
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|76290977|gb|DV030545.1|DV030545
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|76281879|gb|DV021447.1|DV021447
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCTCTACAATATATGAAGTTGTEST: gi|22819609|gb|BU499699.1|BU499699
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|28910319|gb|CB331379.1|CB331379
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|148930178|gb|EC872565.2|EC872565
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|78544023|gb|DV621521.1|DV621521
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|22819406|gb|BU499496.1|BU499496
genomic: GATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|78114017|gb|DV532406.1|DV532406
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|9794347|gb|BE552655.1|BE552655
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAEST: gi|149075823|gb|EE164362.2|EE164362
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAA
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|26455859|gb|CA827442.1|CA827442
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|19822278|gb|BQ048302.1|BQ048302
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|78118666|gb|DV537050.1|DV537050
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|50337531|gb|CO532657.1|CO532657
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: TTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|27522015|gb|CA989121.1|CA989121
genomic: TTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|149106606|gb|EE188499.2|EE188499
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|149106607|gb|EE188500.2|EE188500
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|149008353|gb|EE040506.2|EE040506
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|211244489|gb|FL128350.1|FL128350
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|50338834|gb|CO533960.1|CO533960
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|74236627|gb|DT644541.1|DT644541
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|26559804|gb|CA832039.1|CA832039
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|71766893|gb|DR964830.1|DR964830
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|22546373|gb|BU098684.1|BU098684
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGTCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTEST: gi|78120146|gb|DV538530.1|DV538530
genomic: GCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
EST: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAG GAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
genomic: GCTGTGGCCTTTTACTTCGGTGCAAGATTTGGTTTTGACAAAGAATCCAGgtattgtttt ... attgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGT
gtaacattcacagttagctaacatgtaatcgtttttttttgtgaaattgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTCACGGGAACTGCCAAGAAGCAAACCAAGGAGAAAACTCCGAAAAGCAGC
agctaac putative branch site (score: 72)
tttttttttgtgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggcgttctactattctatggtctaaagcaatttgttggattttgtaacattcacagttagctaacatgtaatcgtttttttttgtgaaattgctgcagGAAGCGCCTTTTTGTCATGATTAATAACCTCCCTACAATATATGAAGTTGTCACGGGAACTGCCAAGAAGCAAACCAAGGAGAAAACTCCGAAAAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA