1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgaactttcctggtcctggattcttttaattagatagcatggaagaaaggatcttgacaaaaagacctagaatcttaaggttttgacgttttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAACTTGCCTGCAGAGGAGGTTCCTCCTGAACTTCCAGAGCCAGCTCTGGG
species | Zea mays |
transcript | GRMZM2G008259_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|101398089|gb|EB820919.1|EB820919
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|149070148|gb|EE158549.2|EE158549
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|76916780|gb|DV166549.1|DV166549
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|76290977|gb|DV030545.1|DV030545
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|76281879|gb|DV021447.1|DV021447
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|22819609|gb|BU499699.1|BU499699
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|28910319|gb|CB331379.1|CB331379
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|148930178|gb|EC872565.2|EC872565
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|22819406|gb|BU499496.1|BU499496
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|78114017|gb|DV532406.1|DV532406
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|9794347|gb|BE552655.1|BE552655
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|149075823|gb|EE164362.2|EE164362
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|78118666|gb|DV537050.1|DV537050
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|149106607|gb|EE188500.2|EE188500
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|149008353|gb|EE040506.2|EE040506
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|50338834|gb|CO533960.1|CO533960
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|74236627|gb|DT644541.1|DT644541
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|26559804|gb|CA832039.1|CA832039
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|71766893|gb|DR964830.1|DR964830
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|13490681|gb|BG517445.1|BG517445
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAEST: gi|78120146|gb|DV538530.1|DV538530
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
EST: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAG AGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
genomic: ACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGgtgagctcgc ... ttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGA
aaaggatcttgacaaaaagacctagaatcttaaggttttgacgttttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAACTTGCCTGCAGAGGAGGTTCCTCCTGAACTTCCAGAGCCAGCTCTGGG
ttttgac putative branch site (score: 94)
ttttgttt CT-rich tract
aatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaactttcctggtcctggattcttttaattagatagcatggaagaaaggatcttgacaaaaagacctagaatcttaaggttttgacgttttgtttgcagAGAAAGAGAATCTGTGTTTGTATGGTCTTCCCAATGAAACATGGGAAGTGAACTTGCCTGCAGAGGAGGTTCCTCCTGAACTTCCAGAGCCAGCTCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - -ggtcctg
- - - - - - - - - - - - - - - - - - gcatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa