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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGGGAGATGGACGGCGGCGGCACGCACCGCACGCCGGAAGACGTGTTCCGGGATTTCCGCGCGCGGCGGGCTGGTATGATCAAAGCGCTCACCACCGgtacgcgcctgctccttacccatttccccccctccctcgcggaatttgaggatttgtgaggcccgcggaggcttcgctcgattggtttcctggcggctaattggtttgatttggttgcttccttgcag

Basic information

species Zea mays
transcript GRMZM2G008259_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008259_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g14010.1 (Oryza sativa), 5'ss of exon 1
CACTGG-GAGATGGACGGCGGCGGCACGCACCGCACGCCGGAAGACGTGTTCCGGGATTTCCGCGCGCGGCGGGCTGGTATGATCAAAGCGCTCACCACCGgtacg-----------------cgcctgctc------cttaccca-----tttccccccctccctcgcggaatttgaggatttgtgaggcccgcggaggcttcgctcgattggtttcctggcggctaattggt--ttgatttggttgcttccttgcag---------------------------
    || |  |||||||| |||||  |||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||| |||| |                 | |  | |       || || |      |||  |    ||  |   | ||    |   |  ||| |    |  | ||    | | ||| ||||   | || | | | ||||   ||| | | |   ||   |   |                           
-GTGGGTGGAATGGACGGAGGCGGGGCGCACCGCACGCCGGAGGACGTGTTCCGGGACTTCCGCGCGCGGCGGGCCGGGATGATCAAGGCGCTGACCACAGgtatggaggggggaagaggggtctctcggtttgagctctcacgcggatgctttttctttttcttttttgaaaggaaaaattgggtgggttttgaaggggtactgattgatcggttgggttgctgatgagtggtgaatgagtggctgattttggtttggttggatttttttttgtttcttttgcag