Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcgcctgctccttacccatttccccccctccctcgcggaatttgaggatttgtgaggcccgcggaggcttcgctcgattggtttcctggcggctaattggtttgatttggttgcttccttgcagACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGGTGAGCTCGCGCGCGCGCGCGTTCCTCCGATTCGCCGCGCCCGTGCCTCGGATTCGCACGATTCGGT

Basic information

species Zea mays
transcript GRMZM2G008259_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008259_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g14010.1 (Oryza sativa), 3'ss of exon 1
----------------------------gtacgcgcctgctccttacccatttccccccctccctcgcggaatttgaggatttgtgaggcccgcggaggct----tcgctcgattggtttcctg---------------gcggctaat--tggtttgatttggttgcttcct--------tgcagACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGGTGAGCTCGCGCGCGCGCGCGTTCCTCCGATTCGCCGCGCCCGTGCCTCGGATTCGCACGATTCGGT
                            ||  | ||   | |        |||  |    ||  |   | ||    |   |  ||| |    |  | ||      | | ||| |||| || |||               | |||| ||  ||||||| || | ||  ||  |        |||||| ||||||||||||||||||||||| |||||||                                                                   
gtatggaggggggaagaggggtctctcggtttgagctctcacgcggatgctttttctttttcttttttgaaaggaaaaattgggtgggttttgaaggggtactgattgatcggttgggttgctgatgagtggtgaatgagtggctgattttggtttggttggatttttttttgtttcttttgcagATGTGGAGAAGTTCTACCAGCAGTGCGACCCAG-------------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgctcgattggtttcctggcggctaattggtttgatttggttgcttccttgcagACGTGGAGAAGTTCTACCAGCAGTGTGACCCAGGTGAGCTCGCGCGCGCGCGCGTTCCTCCGATTCGCCGCGCCCGTGCCTCGGATTCGCACGATTCGGT
                                         ttgcttcctt  CT-rich tract
                               tttgattt  TA-rich tract