1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGATGACGGCCGCGGAGCTCAACAGCAGCGACGCCGACGGCCACGGCGGAAGCACCGGAAACGGGCACCACCGCGGCGGGAAGAAGGGCAGCAAGGGAGggggcggcggcggcgagatcggcgggttcgtgctgtggcagaagaagccggagctgtggtgcctggagctcgtcgtgtccggctgcaagatcagcgccggcagcgacggcaag
species | Zea mays |
transcript | GRMZM2G007055_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGCACCGGAAACGGGCACCACCGCGGCGGGAAGAAGGGCAGCAAGGGAG GTGGCGTGGCGCCAGACGTTGTGGCACCAGTCGCACGCATCCCGCGGTCCC
genomic: AAGCACCGGAAACGGGCACCACCGCGGCGGGAAGAAGGGCAGCAAGGGAGggggcggcgg ... cgacggcaagGTGGCGTGGCGCCAGACGCCGTGGCACCAGTCGCACGCATCCCGCGGTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGATGACGGCCGCGGAGCTCAACAGCAGCGACGCCGACGGCCACGGCGGAAGCACCGGAAACGGGCACCACCGCGGCGGGAAGAAGGGCAGCAAGGGAGggggcggcggcggcgagatcggcgggttcgtgctgtggcagaagaagccggagctgtggtgcctggagctcgtcgtgtccggctgcaagatcagcgccggcagcgacggcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CCGCGGCG