1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtacgacgacagaacgatcgaacccgcatttttctcggtctcgtcgttttactgatcggctgatgattaatccatccgtctctgtgtgtgcgctcgtacgtgctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGCGGGGAGTGGGCGCTGAACAAGGTTAAGAGCATGTACGCGATGGGCAAGG
species | Zea mays |
transcript | GRMZM2G007055_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATC GAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGCEST: gi|211259539|gb|FK958062.1|FK958062
genomic: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATCgtacgtacga ... ctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGC
EST: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATC GAGTCGTCCTCCGCCAAGTACATCGTGCAGCAEST: gi|211045742|gb|FL182719.1|FL182719
genomic: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATCgtacgtacga ... ctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCA
EST: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGGCGATCCCATC GAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGCEST: gi|148997648|gb|EE035870.2|EE035870
genomic: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATCgtacgtacga ... ctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGC
EST: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATC GAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGCEST: gi|211045741|gb|FL182718.1|FL182718
genomic: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATCgtacgtacga ... ctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGC
EST: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATC GAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGCEST: gi|149073872|gb|EE162195.2|EE162195
genomic: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATCgtacgtacga ... ctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGC
EST: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATC GAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGC
genomic: ACCAGTCGCCCTGCTCCGTCCTCTGCGAGCAGCTCAAGGCCGATCCCATCgtacgtacga ... ctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGC
ggctgatgattaatccatccgtctctgtgtgtgcgctcgtacgtgctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGCGGGGAGTGGGCGCTGAACAAGGTTAAGAGCATGTACGCGATGGGCAAGG
tgctgat putative branch site (score: 3)
atgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacgacgacagaacgatcgaacccgcatttttctcggtctcgtcgttttactgatcggctgatgattaatccatccgtctctgtgtgtgcgctcgtacgtgctgatcccagGAGTCGTCCTCCGCCAAGTACATCGTGCAGCAGTACATAGCGGCGTCGGGCGGGGAGTGGGCGCTGAACAAGGTTAAGAGCATGTACGCGATGGGCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGGCGTCG