1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgatttttttttttttgagctggaaggtttaggtacagatgagattttttttagtctcatcttttacatccttattcttttgctacgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAGGAGAAGATAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGT
species | Zea mays |
transcript | GRMZM2G005869_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGACTGGTGGAGTGTGGGAATCCTTCTTTTTGAAATGCTTACGGGAAAG CCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAGEST: gi|78023503|gb|DV491890.1|DV491890
genomic: CAGACTGGTGGAGTGTGGGAATCCTTCTTTTTGAAATGCTTACGGGAAAGgtgatttttt ... cgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAG
EST: TTTGAAATGCTTACGGGAAAG CCACCGTTTGTTGGTGAAAACAGATGCAAGATTCAACAGAAGATAGTAAAGEST: gi|33285635|gb|CF075430.1|CF075430
genomic: TTTGAAATGCTTACGGGAAAGgtgatttttt ... cgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAG
EST: AAATGCTTACGGGAAAG CCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAGEST: gi|211038904|gb|FL471518.1|FL471518
genomic: AAATGCTTACGGGAAAGgtgatttttt ... cgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAG
EST: CAGACTGGTGGAGTGTGGGAATCCTTCTTTTTGAAATGCTTACGGGAAAG CCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAGEST: gi|61236452|gb|DN586205.1|DN586205
genomic: CAGACTGGTGGAGTGTGGGAATCCTTCTTTTTGAAATGCTTACGGGAAAGgtgatttttt ... cgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAG
EST: CAGACTGGTGGAGTGTGGGAATCCTTCTTTTTGAAATGCTTACGGGAAAG CCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAGEST: gi|31628500|gb|CD526638.1|CD526638
genomic: CAGACTGGTGGAGTGTGGGAATCCTTCTTTTTGAAATGCTTACGGGAAAGgtgatttttt ... cgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAG
EST: AAATGCTTACGGGAAAG CCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAG
genomic: AAATGCTTACGGGAAAGgtgatttttt ... cgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAG
gagattttttttagtctcatcttttacatccttattcttttgctacgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAGGAGAAGATAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGT
tttttttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttttttttttttgagctggaaggtttaggtacagatgagattttttttagtctcatcttttacatccttattcttttgctacgtgttgcagCCACCGTTTGTTGGTGGAAACAGATGCAAGATTCAACAGAAGATAGTAAAGGAGAAGATAAAGCTGCCAACTTATTTATCTAGTGAAGTTCACTCTCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC