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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agattattgttcgttccttcataagctctattaataatgtatcttcctttttcttaccaatgtaataagctgttttactttatttatttctggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG

Basic information

species Zea mays
transcript GRMZM2G005082_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397442|gb|DN230258.1|DN230258
EST:     TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAA                         GTTATGACACTTGCGTCTATTTGGCTGCCGG
genomic: TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAAgtaagagtcc ... tggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG
EST: gi|71433996|gb|DR815046.1|DR815046
EST:     TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAA                         GTTATGACACTTGCGTCTATTTGGCTGCCGG
genomic: TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAAgtaagagtcc ... tggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG
EST: gi|60355207|gb|DN222180.1|DN222180
EST:     TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAA                         GTTATGACACTTGCGTCTATTTGGCTGCCGG
genomic: TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAAgtaagagtcc ... tggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG
EST: gi|60339494|gb|DN206467.1|DN206467
EST:     TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAA                         GTTATGACACTTGCGTCTATTTGGCTGCCGG
genomic: TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAAgtaagagtcc ... tggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG
EST: gi|60343009|gb|DN209982.1|DN209982
EST:     TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAA                         GTTATGACACTTGCGTCTATTTGGCTGCCGG
genomic: TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAAgtaagagtcc ... tggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG
EST: gi|60358660|gb|DN225633.1|DN225633
EST:     TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAA                         GTTATGACACTTGCGTCTATTTGGCTGCCGG
genomic: TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAAgtaagagtcc ... tggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG
EST: gi|148943132|gb|EC888190.2|EC888190
EST:     TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAA                         GTTATGACACTTGCGTCTATTTGGCTGCCGG
genomic: TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAAgtaagagtcc ... tggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG
EST: gi|60343691|gb|DN210664.1|DN210664
EST:     TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAA                         GTTATGACACTTGCGTCTATTTGGCTGCCGG
genomic: TGTGGCCTGTGACTTTGGAGGTGCCGGAATACGAACGACGAAAGATCCAAgtaagagtcc ... tggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttttcttaccaatgtaataagctgttttactttatttatttctggcttgcagGTTATGACACTTGCGTCTATTTGGCTGCCGG
     ttcttac  putative branch site (score: 2)
                                ctttatttatttct  putative PPT
                 taataagctgttttac  TA-rich tract