1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGCTAGAAGCGGCGGCGGTGCCAGGGCTCGGCGCTCGGTTGGCAATGGCGAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgctagtggtttgttgttattgagaatgttacgatccttcagttgcgtgcttgttttagtgtttttagcaacgcgtggacggcgagatgccttg...
species | Zea mays |
transcript | GRMZM2G005082_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|21987505|gb|BQ779033.1|BQ779033
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|149105010|gb|EE290485.2|EE290485
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|148960780|gb|EE011439.2|EE011439
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|9825046|gb|BE575248.1|BE575248
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|148960186|gb|EE153438.2|EE153438
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|26558271|gb|CA830506.1|CA830506
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|71433997|gb|DR815047.1|DR815047
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|60356073|gb|DN223046.1|DN223046
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|89251281|gb|DY623067.1|DY623067
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|76917879|gb|DV167052.1|DV167052
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|211085009|gb|FL055872.1|FL055872
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|148958789|gb|EE010405.2|EE010405
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|211085006|gb|FL055869.1|FL055869
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|149094664|gb|EE180208.2|EE180208
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACGEST: gi|86465853|gb|DY232226.1|DY232226
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
EST: GAGGCGGTTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCG GGCAGTGCCACGGCGGCAAGATTGGTGTCTGCTACGGCCGCAACGCCGAAG
genomic: GAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgct ... gcaatcgcagGGCAATGCCACGGCGGCAAGATTGGCGTCTGCTACGGCCGCAACGCCGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCTAGAAGCGGCGGCGGTGCCAGGGCTCGGCGCTCGGTTGGCAATGGCGAGGCGGCTTATGCTGGCGCTCCCTGTGCTCCTCTTCTTATTGCTCGTCGgtgagttgctagtggtttgttgttattgagaatgttacgatccttcagttgcgtgcttgttttagtgtttttagcaacgcgtggacggcgagatgccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC