1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...gctgttatgtggtacaagtggtttgcgtgcatgactttattaatggataaaacgtttgctgcatatattttctgacactgaaatttatttcactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTGAAAAGA
species | Zea mays |
transcript | GRMZM2G003734_T01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTEST: gi|211528665|gb|FL445659.1|FL445659
genomic: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
EST: TACGCMCCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATYTGGATG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTEST: gi|37399448|gb|CF637052.1|CF637052
genomic: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
EST: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGTTG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTEST: gi|60347475|gb|DN214448.1|DN214448
genomic: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
EST: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTEST: gi|60353462|gb|DN220435.1|DN220435
genomic: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
EST: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTEST: gi|71440283|gb|DR821333.1|DR821333
genomic: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
EST: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTEST: gi|74241259|gb|DT649173.1|DT649173
genomic: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
EST: CAGTGAGATCTGGATG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTEST: gi|76292770|gb|DV032338.1|DV032338
genomic: CAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
EST: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTEST: gi|60401370|gb|DN234177.1|DN234177
genomic: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
EST: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATG GCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
genomic: TACGCACCTCTTAGTATTCGCCTTGTTCAGCATGCAGTGAGATCTGGATGgtatgtttct ... cactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTT
gataaaacgtttgctgcatatattttctgacactgaaatttatttcactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTGAAAAGA
ttctgac putative branch site (score: 106)
tttcacttt putative PPT
aaatttatttcacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgttatgtggtacaagtggtttgcgtgcatgactttattaatggataaaacgtttgctgcatatattttctgacactgaaatttatttcactttgcagGCGGTCTATTGAAGAACTGTTGAAACTATTGCCAGGCCCACATCTGGATTTGAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
gctgtta
- - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - ggataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa