1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gcaaaaaccatggtgttcagtatttcagtagctaccattattctgtttggaaataaattatatccatttttcttcttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGTGAGGTAACATTCTATGAAAGGTACTTGGAGAACAGTTTGTGGAAGGAGA
species | Zea mays |
transcript | GRMZM2G003057_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTGGGAGTMCAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCGCTAGCAGCGAAATTGGAAGGTEST: gi|32827371|gb|CD967049.1|CD967049
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
EST: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCGCTAGCAGCGAAATTGGAAGGTEST: gi|211532554|gb|FL475961.1|FL475961
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
EST: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCGCTAGCAGCGAAATTGGAAGGTEST: gi|211367475|gb|FL445555.1|FL445555
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
EST: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCGCTAGCAGCGAAATTGGAAGGTEST: gi|211532553|gb|FL475960.1|FL475960
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
EST: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCGCTAGCAGCGAAATTGGAAGGTEST: gi|149100496|gb|EE186576.2|EE186576
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
EST: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
gctaccattattctgtttggaaataaattatatccatttttcttcttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGTGAGGTAACATTCTATGAAAGGTACTTGGAGAACAGTTTGTGGAAGGAGA
tcttgat putative branch site (score: 20)
tccatttttcttcttg CT-rich tract
attattctgtttggaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaaaaccatggtgttcagtatttcagtagctaccattattctgtttggaaataaattatatccatttttcttcttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGTGAGGTAACATTCTATGAAAGGTACTTGGAGAACAGTTTGTGGAAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA