1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CACGAGGGATGGTAAGCTCGCCTTCCTGACCAACGTGCGGGAACCCAGCTCTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggccttgtaagctttgtgatgatggcatgattatagaaggatgaagttagattactgtgtggtcgtgctctgcaagtctgcatatgctgcaaggaa...
species | Zea mays |
transcript | GRMZM2G003057_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211394987|gb|FL376971.1|FL376971
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG --C--C-TTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211509432|gb|FL413813.1|FL413813
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211074490|gb|FL413464.1|FL413464
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211242704|gb|FL378106.1|FL378106
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211309013|gb|FL381285.1|FL381285
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211256544|gb|FL390497.1|FL390497
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211150343|gb|FL403094.1|FL403094
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCMTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|93284444|gb|EB676708.1|EB676708
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211115170|gb|FL372345.1|FL372345
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|149100496|gb|EE186576.2|EE186576
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211127336|gb|FL391795.1|FL391795
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGATEST: gi|211421544|gb|FL418414.1|FL418414
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
EST: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAG GGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
genomic: CTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggcctt ... ctgaatgtagGGCAGCCTTTGTCCATTGGAGTATGCCACAGAAATTGCAAAGGAAGCAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGAGGGATGGTAAGCTCGCCTTCCTGACCAACGTGCGGGAACCCAGCTCTCTGATCGGGGCCAAGACCAGAGGACAGCTCCCGGTCAGGTTTCTACAGgttcggccttgtaagctttgtgatgatggcatgattatagaaggatgaagttagattactgtgtggtcgtgctctgcaagtctgcatatgctgcaaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC